PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G379500.7.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 592aa MW: 66874.3 Da PI: 6.3521

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G379500.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	91	1.3e-28	443	527	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++ ev+aLi +r+ + +++++++lk+ Wee+s m++ gf+rs+k+Ckekwen+nk++kk ++ ++r +s++tcpyfd+l+ Aqcoe1G379500.7.p 443 RWPEPEVKALISIRTGIAHKFQTSELKQSVWEEISGTMSSMGFNRSAKKCKEKWENINKYFKKSVASGQQR-RRSKKTCPYFDELH 527 8***************************************************************99998.677789****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.364	436	500	IPR017877	Myb-like domain
Pfam	PF13837	6.8E-21	442	527	No hit	No description
CDD	cd12203	7.91E-27	442	506	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence Send to blast
MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT 60 SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD 120 GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG 180 IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ 240 ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA 300 QKVQLIHIPV SPHPGVQQSQ HPGEHQSPHP GVHQSPHPSV RQPPHLGEHQ SPHPGEHQSP 360 HPSVHQFQHP GQHQSPHPGE HQSPRPGEHQ SPRPGEHQDE AENRLGSTAK MVEPVQSLQY 420 PETPYPDDCQ DQAEYKLALR SNRWPEPEVK ALISIRTGIA HKFQTSELKQ SVWEEISGTM 480 SSMGFNRSAK KCKEKWENIN KYFKKSVASG QQRRRSKKTC PYFDELHVLY QNGSLNFKTP 540 FEVRMEGEAF ENRELQACNQ LAVTLVPDIV PSSTPADFSE GIRSSLPPKV S*

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence Send to blast

MTLTNISDEI SPFPDAGNLL YGERSSFPTQ KLLPIRSNGD EDSSSPTNLA SGSSSPHIVT  60
SNEDSNMEME IDGNPSSASN KGPLWEIVAK KLEQMGYEYP KDNIFSQLLA FGNRNNNNDD  120
GSEKQMSEEN GSVQAQAQPS VPPDPIDIAN MLVALHTTSA EFQENEESNR ENKGESGEEG  180
IVDVLKRKRK RRNYSEIELV LLSMVDRLMK KQEEMHKQLL DLIDKQEKER IAREEAWREQ  240
ELERHKKERE VRDRETSRNV ALISYIGKFL GKQIEVPKLP QPPRLDESQY QAQDKLRSSA  300
QKVQLIHIPV SPHPGVQQSQ HPGEHQSPHP GVHQSPHPSV RQPPHLGEHQ SPHPGEHQSP  360
HPSVHQFQHP GQHQSPHPGE HQSPRPGEHQ SPRPGEHQDE AENRLGSTAK MVEPVQSLQY  420
PETPYPDDCQ DQAEYKLALR SNRWPEPEVK ALISIRTGIA HKFQTSELKQ SVWEEISGTM  480
SSMGFNRSAK KCKEKWENIN KYFKKSVASG QQRRRSKKTC PYFDELHVLY QNGSLNFKTP  540
FEVRMEGEAF ENRELQACNQ LAVTLVPDIV PSSTPADFSE GIRSSLPPKV S*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	KRKRKRR
2	186	191	RKRKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5ERF4	0.0	A0A2G5ERF4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00325.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G33240.1	3e-27	GT-2-like 1

Link Out ? help Back to Top
Phytozome	Aqcoe1G379500.7.p