PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G382800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 507aa    MW: 56533.2 Da    PI: 5.8815
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G382800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-055476123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C+k+Fs+   L  Hir+H
  Aqcoe1G382800.1.p 54 YVCKVCKKVFSSGKALGGHIRVH 76
                       9********************99 PP
2zf-C2H214.50.0001323345123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC dC+ksF ++  L  H ++H
  Aqcoe1G382800.1.p 323 YKCLDCNKSFATHQALGGHRSSH 345
                        9***************9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.64E-75376No hitNo description
Gene3DG3DSA:3.30.160.604.5E-45376IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00585476IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6995481IPR007087Zinc finger, C2H2
PfamPF139124.5E-85472IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
SuperFamilySSF576673.64E-7127154No hitNo description
SMARTSM003550.23132154IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280134154IPR007087Zinc finger, C2H2
PfamPF139121.8E-5134156IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159323345IPR007087Zinc finger, C2H2
SMARTSM003550.081323345IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.92E-8323345No hitNo description
PfamPF139125.9E-7323347IPR007087Zinc finger, C2H2
PROSITE patternPS000280325345IPR007087Zinc finger, C2H2
SuperFamilySSF576673.92E-8393420No hitNo description
PfamPF139121.1E-12397421IPR007087Zinc finger, C2H2
PROSITE profilePS501579.993398420IPR007087Zinc finger, C2H2
SMARTSM003550.059398420IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280400420IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MELDGPSPST SPSCEGEEEE EAGLKMNKNN LKRSEMGLKV KFKLGNNKDD QEKYVCKVCK  60
KVFSSGKALG GHIRVHNLQV ERQEEEVEED DFDNEDDNQN LNQLKDKIKS KPKCYIKIPS  120
SNPIKDNLDL EPTCIVCKKI FKSMKSLFGH MRCHPEREWR GINPPPNAVK NSEGSSSSSS  180
SKELKLMGDS PNSFHIPKWT VKDKRGRKKL TCASPASDSS SDQLDEEIPE VVYNLMLLAN  240
GGEPLDSSLT IKHRSNEESK MKNRRWSEES ESSTPLKKLK MEEFDKESRV NDNDFSLGKK  300
KKTKLWKDLE SSPRVGVVME MEYKCLDCNK SFATHQALGG HRSSHMKFNA PLPTPLLPPP  360
PQSEEEVAVN NNDMLESLSD DHVMGSTSGS KQQQQQTHKC QICNKTFSTG QALGGHKRCH  420
WNGHLPATIE AQAPIATPPP PATTTATSSV ASQDDEEAAA SRNVLDFDLN ELPAMEEEEE  480
EPTDLDYPQV QAQAHTHASF FYNSAT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5ER960.0A0A2G5ER96_AQUCA; Uncharacterized protein
STRINGAquca_005_00300.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-29C2H2 family protein