PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G384700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 571aa    MW: 63876.1 Da    PI: 6.5168
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G384700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.93.6e-11107146444
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
    Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                        W ++E+ ll+++++++G+g+W+ +a+++g ++   qc++++
  Aqcoe1G384700.1.p 107 WNADEEILLLEGIEMYGMGNWAEVAEHVG-TKGKDQCIEHY 146
                        *****************************.999*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250244.8E-16034570IPR016827Transcriptional adaptor 2
PROSITE profilePS5013510.7794390IPR000433Zinc finger, ZZ-type
SMARTSM002913.4E-104388IPR000433Zinc finger, ZZ-type
PfamPF005691.3E-104687IPR000433Zinc finger, ZZ-type
CDDcd023354.88E-264795No hitNo description
SuperFamilySSF578508.36E-1547110No hitNo description
PROSITE patternPS0135704976IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.09E-11100153IPR009057Homeodomain-like
PROSITE profilePS5129321.442102154IPR017884SANT domain
SMARTSM007179.0E-10103152IPR001005SANT/Myb domain
PfamPF002491.0E-10106146IPR001005SANT/Myb domain
CDDcd001671.17E-10107146No hitNo description
Gene3DG3DSA:1.10.10.603.3E-7107147IPR009057Homeodomain-like
SuperFamilySSF466891.76E-18474567IPR009057Homeodomain-like
PROSITE profilePS5093410.557484570IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0016573Biological Processhistone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MGRSRLPTSV DDDLNQRSKR KRAASSGENL ESSNAGQETT EGKRALYHCN YCNKDISGKI  60
RVKCVKCPDF DLCVECFSVG AEVTPHKSNH PYRVMDNLSF PLICPDWNAD EEILLLEGIE  120
MYGMGNWAEV AEHVGTKGKD QCIEHYTEAY IDSPCFPLPD MSHVIGKNRK ELLAMAKGYS  180
QGRKGFPTLG EVPLKEESAF SPLRIKIEES GVGRSPSSLT SDSGIGSSST ITAASGAVKK  240
ASDMAHIKDG TDTIKLEEAH VDRSIGIKKP KPSGDEGPSM TELSGYNPKR HEFDPEYDND  300
AEQALADMEF KDTDTDAEHA LKLEMLHIYS RRLDERKRRK DFIIERNLLY PDPLLKDLSP  360
EEKEIYKHYN VFMRFHSKEE HGDLMKTVIE EHRIRRRIRD LQEARDAGCR TSAESNRYID  420
LKRKREAEEY ERKAKESAQL GPGGKLQQKM SRIKGEPDTS SRGSIKGMCL ESSVKDTSST  480
TAGHAFANSL DDWDVTGLPG SELLSTSEQR LCCEAKMLPS QYLKMAEVIS VKIFEGSVTK  540
KSDAYGFFKV DPSKVDKVYD MLVKKGIAQP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E3e-37471625120Transcriptional adapter 2
6cw3_G3e-37471625120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1335340RKRRKD
2392398RIRRRIR
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054856.10.0PREDICTED: transcriptional adapter ADA2-like isoform X2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2G5ER670.0A0A2G5ER67_AQUCA; Transcriptional adapter
STRINGAquca_005_00280.10.0(Aquilegia coerulea)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]