PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G392900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 593aa    MW: 65536.3 Da    PI: 7.7243
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G392900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.62.6e-33250306259
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers  d++++ei+Y+g+Hnh 
  Aqcoe1G392900.1.p 250 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHA 306
                        8****************************************.***************7 PP
2WRKY105.13.6e-33419477159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+++d ++v++tYeg+Hnh+
  Aqcoe1G392900.1.p 419 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCPVRKHVERASHDLRAVITTYEGKHNHD 477
                        59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-29239308IPR003657WRKY domain
SuperFamilySSF1182901.96E-25243308IPR003657WRKY domain
PROSITE profilePS5081123.376244308IPR003657WRKY domain
SMARTSM007742.4E-36249307IPR003657WRKY domain
PfamPF031063.0E-25250305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.9E-37404479IPR003657WRKY domain
SuperFamilySSF1182904.45E-29411479IPR003657WRKY domain
PROSITE profilePS5081138.572414479IPR003657WRKY domain
SMARTSM007747.7E-39419478IPR003657WRKY domain
PfamPF031068.8E-26420477IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010120Biological Processcamalexin biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0010508Biological Processpositive regulation of autophagy
GO:0042742Biological Processdefense response to bacterium
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0070370Biological Processcellular heat acclimation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MASSTGSLDT SANSHPYNPH HQTFSFSNQY MNSSFSDLLS TGTGDDDENN RIMLRRSGGS  60
DGGLSDRIAD RTGSGIPKFK SIPPPSLPIS PPSVSPSSYF SIPPGLSPTE LLDSPVLLSS  120
SNLLPSPTTG TFPTQAFNWR ANSNSFQQGV KQEDRNYSDF SFQPQTKSSS GSIFQSSMSA  180
GDMYKGQQQQ QQQQQQPWSF QEPTKQSDFS TGKPIVKPET ASLQNNGAPQ SDYNQYAQPT  240
QTLREQRRSD DGYNWRKYGQ KQVKGSENPR SYYKCTFPNC PTKKKVERSL DGQITEIVYK  300
GSHNHAKPQS TRRSSASSQS IQAAVVPSSS EVSDHFGSHG NTQMDSVTTP ENSSISIGDE  360
DLDRSSQRSR SGGDEFDEDE PEAKKWKKES ENEVISASGS RTVREPRVVV QTTSDIDILD  420
DGYRWRKYGQ KVVKGNPNPR SYYKCTNAGC PVRKHVERAS HDLRAVITTY EGKHNHDVPA  480
ARGSGNHAVN RPLPDNSNHN NATMPIRPSA TTTQSNHNAN NTFRNGRLPT SEGQTPFTLE  540
MLQAPAGGYG FSSGYNNSMN SFMNQQQQTD NNVFPRTKEE PRDDMFMESL LY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36240480878Probable WRKY transcription factor 4
2lex_A2e-36240480878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00299DAPTransfer from AT2G38470Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888322.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R41e-144WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2G5EQU30.0A0A2G5EQU3_AQUCA; Uncharacterized protein
STRINGAquca_005_00209.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.11e-109WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]