PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G397300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 370aa    MW: 42125.5 Da    PI: 8.526
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G397300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.43.5e-10491191791
                        E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                 B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         lp +f+ ehg++   +  ++l+ ++g sW++ l  +k sgr+ l +GW+ F++   + +   + F+++g+s+f 
  Aqcoe1G397300.1.p  49 ELPSEFVGEHGNE--LPEVVVLKVRTGDSWNISL--EKFSGRIALCGGWQTFADHYSIGADYCLFFTYNGNSRFD 119
                        59********865..78899**************..*********************************999984 PP
2B3382.9e-122883681798
                        E--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  17 vlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         lp k +++h +++ ++ t++l+   +g++W v + y +++++   ++kG   F ++n++k+gD +vF+l+++++++++v++++
  Aqcoe1G397300.1.p 288 ALPSKILKHH-LPEFGG-TVILQIsNEGKKWVVGCYYtSRNKC-WRMRKGLDAFIRENNIKVGDKCVFELIKKEDASFNVTILS 368
                        5888888655.454444.555554399********77544444.579************************9999999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.53233126IPR003340B3 DNA binding domain
SMARTSM010190.005734126IPR003340B3 DNA binding domain
CDDcd100173.69E-947124No hitNo description
SuperFamilySSF1019364.9E-1647125IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-1447124IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.13273363IPR003340B3 DNA binding domain
CDDcd100176.66E-14281368No hitNo description
SuperFamilySSF1019363.73E-14285367IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.0E-15286367IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-10288368IPR003340B3 DNA binding domain
PROSITE profilePS508639.911289369IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MFFVEQQLLH EKDIQVELKL LNKDSHLVNK EEDLVQLHKG YKGYMVFVEL PSEFVGEHGN  60
ELPEVVVLKV RTGDSWNISL EKFSGRIALC GGWQTFADHY SIGADYCLFF TYNGNSRFDV  120
IISDAGDAEI IYPSKPVKLE NPIPDGKSLV PKNNKCRKNF GKKLGMTCNK DNLRESVLFA  180
GKHHQGNQRT ELDEPSRNLA IEDVVPNGIP ASYTPFDQSK EKDGGAQTIA AFKSKHPFFI  240
QNVTSAFLCH YYMALPSKIL KHHLPELCRT HTFFPLKIYF ILCRLYQALP SKILKHHLPE  300
FGGTVILQIS NEGKKWVVGC YYTSRNKCWR MRKGLDAFIR ENNIKVGDKC VFELIKKEDA  360
SFNVTILSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EQK51e-109A0A2G5EQK5_AQUCA; Uncharacterized protein
STRINGAquca_005_00157.11e-110(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-18B3 family protein