PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G398000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NAC

Protein Properties

Length: 245aa MW: 27937.1 Da PI: 5.3448

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G398000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	145.7	2.4e-45	4	134	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrF Pt+eelv++yL++k++g + e+++vi+ vdiy+++Pw+Lp+ ++++ ++w+fF++r++++a+g r+nr+t+sgyWkatg Aqcoe1G398000.1.p 4 LPPGFRFYPTEEELVSFYLHNKLQGIReEEFHKVIPVVDIYQFDPWHLPQisgdLCYGDPEQWFFFTPRQEREARGGRPNRITNSGYWKATG 95 79*********************993445566***********656664455778*************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 + v+s ++++vg+kkt+vfy+g+ap+g+kt+W m ey+ Aqcoe1G398000.1.p 96 SPAYVYS-NDRVVGVKKTMVFYEGKAPTGNKTKWKMIEYK 134 ***.999**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-50	3	161	IPR003441	NAC domain
PROSITE profile	PS51005	49.7	4	162	IPR003441	NAC domain
Pfam	PF02365	1.1E-23	5	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MDELPPGFRF YPTEEELVSF YLHNKLQGIR EEEFHKVIPV VDIYQFDPWH LPQISGDLCY 60 GDPEQWFFFT PRQEREARGG RPNRITNSGY WKATGSPAYV YSNDRVVGVK KTMVFYEGKA 120 PTGNKTKWKM IEYKAIEGEA TSLNISTPML RHEYSVCRVY VNSGCVRTFD RRPSGPAVTE 180 TPANHTLGNV DASTSHQSSI NTADKATSPG IVSPENHAHP SLTDDTDDWE MPDTIWQWEQ 240 LNWL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-39	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-39	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-39	4	160	17	163	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-39	4	160	17	163	NO APICAL MERISTEM PROTEIN
3swm_A	5e-39	4	160	20	166	NAC domain-containing protein 19
3swm_B	5e-39	4	160	20	166	NAC domain-containing protein 19
3swm_C	5e-39	4	160	20	166	NAC domain-containing protein 19
3swm_D	5e-39	4	160	20	166	NAC domain-containing protein 19
3swp_A	5e-39	4	160	20	166	NAC domain-containing protein 19
3swp_B	5e-39	4	160	20	166	NAC domain-containing protein 19
3swp_C	5e-39	4	160	20	166	NAC domain-containing protein 19
3swp_D	5e-39	4	160	20	166	NAC domain-containing protein 19
4dul_A	4e-39	4	160	17	163	NAC domain-containing protein 19
4dul_B	4e-39	4	160	17	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271606.1	1e-110	PREDICTED: NAC domain-containing protein 90-like isoform X1
Swissprot	Q9FMR3	8e-84	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2G5EQN4	0.0	A0A2G5EQN4_AQUCA; Uncharacterized protein
STRING	Aquca_005_00168.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	3e-86	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Aqcoe1G398000.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]