PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G399300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 143aa    MW: 16151.5 Da    PI: 8.0621
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G399300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-1512931198
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       +k ++l +p +f+eehg++   s   +l+ ++g +W++ l  r+  gr+v+ +GWkeF++   L++g  + F+++g+s+f   v +++
  Aqcoe1G399300.1.p 12 SKDCQLEVPSEFVEEHGNQ--LSDVGVLKVRTGDTWNIGL--RRFAGRIVFNRGWKEFADHYSLDAGYCLFFTYSGNSRF--DVVICD 93
                       6889************877..666778888**********..**********************************9999..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998295IPR003340B3 DNA binding domain
SMARTSM010191.9E-10695IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-18794IPR015300DNA-binding pseudobarrel domain
PfamPF023627.0E-121293IPR003340B3 DNA binding domain
CDDcd100177.45E-151293No hitNo description
SuperFamilySSF1019368.83E-181594IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MKRIKFFRLI GSKDCQLEVP SEFVEEHGNQ LSDVGVLKVR TGDTWNIGLR RFAGRIVFNR  60
GWKEFADHYS LDAGYCLFFT YSGNSRFDVV ICDPGDAEII YPTKPVKFKK PMLDVETVLP  120
MTKSNGTVLP MTHNDNQGIT NI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EQV51e-102A0A2G5EQV5_AQUCA; Uncharacterized protein
STRINGAquca_005_00159.11e-103(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-19B3 family protein