PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G399600.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 311aa    MW: 35324.6 Da    PI: 8.5489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G399600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.3e-1412931198
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       ++ ++l +p +f+eehg++   s   +l+ ++g +W++ l  r+  gr+v+ +GWkeF++   L++g  + F+++g+s+f   v +++
  Aqcoe1G399600.3.p 12 SEDCQLEVPSEFVEEHGNQ--LSDVGVLKVRTGDTWNIGL--RRFAGRIVFNGGWKEFADHYSLDAGYCLFFTYSGNSRF--DVVICD 93
                       67899***********877..666778888**********..**********************************9999..777776 PP
2B352.31.1e-16209308197
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        ffk  ++s + k++ + +p++f+e+h+ + ++s+t+tl+  +  ++W v + y    k+s++  ++kG  +F ++n +k gD++vF+l++++
  Aqcoe1G399600.3.p 209 FFKLNVSSAYYKHRHMFFPRQFLESHMPEFNSSVTVTLQVANMeKKWLVGC-YstcYKNSRSWRMSKGLGKFLRENSIKIGDSCVFELIDKE 299
                        8999**********************7777799******95555*******.44789999999*************************9877 PP

                        EE..EEEEE CS
                 B3  89 efelvvkvf 97 
                        +  ++v vf
  Aqcoe1G399600.3.p 300 NVVFNVIVF 308
                        776666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.4E-18494IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-10695IPR003340B3 DNA binding domain
PfamPF023628.6E-111392IPR003340B3 DNA binding domain
SuperFamilySSF1019364.12E-171494IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-131593No hitNo description
Gene3DG3DSA:2.40.330.101.7E-15204309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-15206309IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-14209308IPR003340B3 DNA binding domain
PROSITE profilePS5086311.223209310IPR003340B3 DNA binding domain
SMARTSM010199.7E-11209309IPR003340B3 DNA binding domain
CDDcd100171.41E-14209309No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MKRSKFFRLI GSEDCQLEVP SEFVEEHGNQ LSDVGVLKVR TGDTWNIGLR RFAGRIVFNG  60
GWKEFADHYS LDAGYCLFFT YSGNSRFDVV ICDPGDAEII YPTKPVKFKE PMLDVETVLP  120
VTKSNGTEKK FVKKLSITCN KENLRESVLS AGKHHQEKQI IELGEPSLCQ MVEDVATNKV  180
LAAKPSFLQT KEKDGGVSTA MPFMSNHPFF KLNVSSAYYK HRHMFFPRQF LESHMPEFNS  240
SVTVTLQVAN MEKKWLVGCY STCYKNSRSW RMSKGLGKFL RENSIKIGDS CVFELIDKEN  300
VVFNVIVFSQ *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EQK50.0A0A2G5EQK5_AQUCA; Uncharacterized protein
STRINGAquca_005_00157.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-32B3 family protein