PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G399600.4.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 227aa    MW: 25815.7 Da    PI: 8.4695
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G399600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-1512931198
                       HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                       ++ ++l +p +f+eehg++   s   +l+ ++g +W++ l  r+  gr+v+ +GWkeF++   L++g  + F+++g+s+f   v +++
  Aqcoe1G399600.4.p 12 SEDCQLEVPSEFVEEHGNQ--LSDVGVLKVRTGDTWNIGL--RRFAGRIVFNGGWKEFADHYSLDAGYCLFFTYSGNSRF--DVVICD 93
                       67899***********877..666778888**********..**********************************9999..777776 PP
2B336.49.5e-121472242697
                        T....---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                 B3  26 h....ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                             g+ ++e++ + l     ++W v + y    k+s++  ++kG  +F ++n +k gD++vF+l+++++  ++v vf
  Aqcoe1G399600.4.p 147 SvlsaGKHHQEKQIIELVANMEKKWLVGC-YstcYKNSRSWRMSKGLGKFLRENSIKIGDSCVFELIDKENVVFNVIVF 224
                        155544455566789999***********.44789999999*************************9877776666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.998295IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.3E-18494IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.0E-10695IPR003340B3 DNA binding domain
PfamPF023624.6E-111393IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-171494IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-131593No hitNo description
SMARTSM010190.1131225IPR003340B3 DNA binding domain
PfamPF023621.1E-9143224IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-10148225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.12E-10154223IPR015300DNA-binding pseudobarrel domain
CDDcd100176.92E-8156225No hitNo description
PROSITE profilePS508638.529161226IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MKRSKFFRLI GSEDCQLEVP SEFVEEHGNQ LSDVGVLKVR TGDTWNIGLR RFAGRIVFNG  60
GWKEFADHYS LDAGYCLFFT YSGNSRFDVV ICDPGDAEII YPTKPVKFKE PMLDVETVLP  120
VTKSNGTEKK FVKKLSITCN KENLRESVLS AGKHHQEKQI IELVANMEKK WLVGCYSTCY  180
KNSRSWRMSK GLGKFLRENS IKIGDSCVFE LIDKENVVFN VIVFSQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EQK51e-115A0A2G5EQK5_AQUCA; Uncharacterized protein
STRINGAquca_005_00157.11e-116(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-19B3 family protein