PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G408500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

LBD

Protein Properties

Length: 177aa MW: 19740.2 Da PI: 6.2908

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G408500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.9	1.9e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +CaaCk+l+rkC+++C++apyfp e+ ++fa +hk+FGasn +k+l+++p+++r +a++slv+eAear++dPv+G++g ++ lq ++ ql++ Aqcoe1G408500.1.p 11 SCAACKLLKRKCTPNCIFAPYFPPERLQSFAKIHKVFGASNASKILSEVPQDQRAEAVNSLVFEAEARVNDPVHGCIGAMNLLQTKMVQLQH 102 6***************************************************************************************** PP DUF260 93 elallkee 100 +la ++++ Aqcoe1G408500.1.p 103 DLAITRAH 110 *99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.086	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-37	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MKRCDSRSAS SCAACKLLKR KCTPNCIFAP YFPPERLQSF AKIHKVFGAS NASKILSEVP 60 QDQRAEAVNS LVFEAEARVN DPVHGCIGAM NLLQTKMVQL QHDLAITRAH LACYTNDNFQ 120 DLHHCHDPVE NYVGAIPLDG YDDIGRESNS DVPKSLELQQ HDDERLDYPY GSFCQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-39	8	104	8	104	LOB family transfactor Ramosa2.1
5ly0_B	1e-39	8	104	8	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023549827.1	9e-55	LOB domain-containing protein 21-like isoform X2
Swissprot	Q9SRL8	8e-50	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A2G5CMD4	1e-129	A0A2G5CMD4_AQUCA; Uncharacterized protein
STRING	Aquca_045_00193.1	1e-130	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-42	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Aqcoe1G408500.1.p

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]