PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G411100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 452aa    MW: 50625.5 Da    PI: 6.0189
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G411100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.38.1e-122444501373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaal..... 81 
                        +++lL++cA+++s++++++a++l++ ls ++sp+gd+++Rl++ f++AL  rl+r + ++ ++ +ps +s                      
  Aqcoe1G411100.1.p  44 MRRLLITCADFLSQSNFSAAHRLVSFLSSTSSPHGDSTERLVHQFVRALTIRLNRASASMISSTTPSLSSCVPhphflpP------Asvass 129
                        5799***************************************************6666666665555553223444441......044555 PP

               GRAS  82 .............................klfsevsPilkfshltaNqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslR 143
                                                       +++v+P+++fshltaNqaIlea+eg+e +Hi+Dfd i+qG+QWp+L+qa+a+R+++p ++R
  Aqcoe1G411100.1.p 130 stssgltllelevveeeeallhhqlqssfICLNQVTPFIRFSHLTANQAILEAIEGQESIHILDFDtIMQGVQWPPLMQAIAERSNPPNMIR 221
                        668999***************9988765444**********************************989************************ PP

               GRAS 144 iTgvgspesgskeeleetgerLakfAeelgvpfefnvl..vakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvk 232
                        iTg+g     + e+l +tg+rL++fA++lg++f+f++l  + ++  +l+l +++ + ++E+l+Vn+vl lhrll+++ +  +  + +L+++k
  Aqcoe1G411100.1.p 222 ITGIGY----DLETLARTGQRLENFAKSLGLRFHFHPLllLDSTSVALQLsSSITLLQEETLVVNCVLYLHRLLNRNDDDYE-VRLFLHTIK 308
                        ******....***************************953222333344325789999****************76666666.99******* PP

               GRAS 233 slsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                         ++Pkvv+++e+ea++n++ F +rfleal++y+alfds+ea+lp+++ er  +E+++lgreiv+vv++eg+er+er e++++W e+++++GF
  Aqcoe1G411100.1.p 309 AMNPKVVTLAEREANLNNPLFSQRFLEALDHYTALFDSMEATLPPNNTERLAIEQVWLGREIVDVVSAEGEERKERYERFQNWAEKMRRSGF 400
                        ******************************************************************************************** PP

               GRAS 325 kpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                        ++vpls +a++qaklllr ++ s+gy+++  ++sl+lgW++++L+svS+W
  Aqcoe1G411100.1.p 401 SNVPLSPFAVAQAKLLLRLHYpSEGYQLHILNDSLFLGWQNHALFSVSSW 450
                        ************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.01718430IPR005202Transcription factor GRAS
PfamPF035142.9E-11944450IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010014Biological Processmeristem initiation
GO:0010223Biological Processsecondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MAEDSTLYNI PLSTPQPPPP VLTVVSSSDQ QQQGQNPPSS AAQMRRLLIT CADFLSQSNF  60
SAAHRLVSFL SSTSSPHGDS TERLVHQFVR ALTIRLNRAS ASMISSTTPS LSSCVPHPHF  120
LPPASVASSS TSSGLTLLEL EVVEEEEALL HHQLQSSFIC LNQVTPFIRF SHLTANQAIL  180
EAIEGQESIH ILDFDTIMQG VQWPPLMQAI AERSNPPNMI RITGIGYDLE TLARTGQRLE  240
NFAKSLGLRF HFHPLLLLDS TSVALQLSSS ITLLQEETLV VNCVLYLHRL LNRNDDDYEV  300
RLFLHTIKAM NPKVVTLAER EANLNNPLFS QRFLEALDHY TALFDSMEAT LPPNNTERLA  360
IEQVWLGREI VDVVSAEGEE RKERYERFQN WAEKMRRSGF SNVPLSPFAV AQAKLLLRLH  420
YPSEGYQLHI LNDSLFLGWQ NHALFSVSSW H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-645145026378Protein SCARECROW
5b3h_A9e-645145025377Protein SCARECROW
5b3h_D9e-645145025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252869.10.0PREDICTED: scarecrow-like protein 18
RefseqXP_011000401.10.0PREDICTED: scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLA0A2G5CNE60.0A0A2G5CNE6_AQUCA; Uncharacterized protein
STRINGAquca_045_00170.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-127GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]