PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G418500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 682aa    MW: 74062.4 Da    PI: 6.5077
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G418500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.9e-07261281526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ GtC+ Gd C +aHg
  Aqcoe1G418500.1.p 261 PCPEFRK-GTCRQGDACEYAHG 281
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.31E-1646147IPR020683Ankyrin repeat-containing domain
PfamPF127962.0E-1168141IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.49472147IPR020683Ankyrin repeat-containing domain
SMARTSM002487.5E-472102IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.209.8E-1773152IPR020683Ankyrin repeat-containing domain
CDDcd002042.72E-1574147No hitNo description
PROSITE profilePS5008812.022107142IPR002110Ankyrin repeat
SMARTSM002482.2E-5107139IPR002110Ankyrin repeat
SMARTSM003562.7E-5256282IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.521261283IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4261281IPR000571Zinc finger, CCCH-type
SMARTSM0035631291314IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.859291315IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 682 aa     Download sequence    Send to blast
MCSGSKKELC PAEVVMENEN DKQVCKFSLL LELSAGNDLI GFKQAIEEEG LDVDEASFWY  60
GRAIGSKKMG LQERTPLMMS AMFGNKEVVK YILSTGLVDV NRACGSDGVT ALHCAAAGGF  120
PGSAEIVKLL LDSSADVNSV DAHGRRPGDV IASVSRPSFN STRKTLEILL KGSCSFGEEL  180
AVDLLDEQLL LQTPRKEYPV DLTMPDIKNG IYGTDEFRMY TFKVKPCSRA YSHDWTECPF  240
VHPGENARRR DPRKFHYSCV PCPEFRKGTC RQGDACEYAH GVFECWLHPA QYRTRLCKDE  300
TGCTRRVCFF AHKPDELRPL YASTGSAVPS PRSSSNNSSL DMSPLALGSP SMMMLPTSTP  360
PMSPSAAVSS PMGGSGWQNQ SSLVPPMLQL PGSRLKSALS ARDVELEMEL LGFDSPRRHQ  420
QHQSLMDEMS NISSPSSWSN SMATVAALAA SSGGRTGDYG RHGGVRPTNL EDVFGSLDPS  480
VLSQLQGLNM KASASQMNSP TGIQIRQNIN QQLRSSYPSN IPSSPVRSPS SFSLDPSSAA  540
AFMSSRSAAF AKRSQSFIDR GALNRHLGAS SLANSGTTMS STLSDWGSPT GKLDWGIQGE  600
ELNKLRKSAS FGLRSSHGMS SNVDEPDVSW VQTLVKDVQP AGNLRYGPEE AQPQYHLNSG  660
GSEMMSPWME QLYMEQEQLV A*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016084.20.0PREDICTED: zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2G5CN470.0A0A2G5CN47_AQUCA; Uncharacterized protein
STRINGAquca_045_00106.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-158C3H family protein