PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G418600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 281aa    MW: 33527.7 Da    PI: 7.763
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G418600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.49.2e-2438120186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W+ qe+++ + +r e+++++ ++k++k lWe +s+km+e+g+ rs++qCk+kw+nl +ryk  +++e +     ++++p++++l+
  Aqcoe1G418600.1.p  38 QWSLQETREFLSIRAELDQTFMETKRNKVLWEVISNKMKEKGYYRSSEQCKCKWKNLVTRYKGSETMEADT---MRQQFPFYNELQ 120
                        7********************************************************************94...55679*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00653597IPR001005SANT/Myb domain
CDDcd122033.19E-2237102No hitNo description
PfamPF138372.6E-2038122No hitNo description
PROSITE profilePS500907.3173995IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEGQQHHLHH HHQQQQHQHH LNVPIDTGGG VGGDRVPQWS LQETREFLSI RAELDQTFME  60
TKRNKVLWEV ISNKMKEKGY YRSSEQCKCK WKNLVTRYKG SETMEADTMR QQFPFYNELQ  120
AIFAARMQRM LWLEAEGGAS GSMKKRSGRL SSDDEDDNEE SEEEKSTTIS KKKKRGKIAN  180
TSGSSSTNIT NLQEVLEEFM KQQMQLEMQW RETMEAREEE RRIKETEWRQ RMEALERERL  240
MMDRSWRERE EQRRMKEEER AAKRDVLITA LLNKLRREDM *
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054174.11e-113PREDICTED: trihelix transcription factor GT-3b-like isoform X1
SwissprotO804509e-72TGT3B_ARATH; Trihelix transcription factor GT-3b
TrEMBLA0A1U8Q5U91e-112A0A1U8Q5U9_NELNU; trihelix transcription factor GT-3b-like isoform X1
STRINGXP_010264622.11e-112(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.16e-62Trihelix family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]