PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G420000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-X1
Protein Properties Length: 886aa    MW: 99295.5 Da    PI: 8.3649
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G420000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1162.6e-05199217120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG H C  lCH+GpCp+Cp+
  Aqcoe1G420000.1.p 199 CG-HYCLLLCHPGPCPSCPK 217
                        **.***************96 PP
2zf-NF-X120.41.1e-06251270120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG HkC++ CH G CppC++
  Aqcoe1G420000.1.p 251 CGVHKCSENCHDGLCPPCRE 270
                        ******************85 PP
3zf-NF-X117.21.1e-05411430120
           zf-NF-X1   1 CGkHkCqklCHeGpCppCpq 20 
                        CG+H C + C+ G+CppC++
  Aqcoe1G420000.1.p 411 CGRHACRRRCCDGDCPPCSE 430
                        ******************85 PP
4zf-NF-X118.15.8e-06432457120
           zf-NF-X1   1 CG......kHkCqklCHeGpCppCpq 20 
                        CG      +HkC ++CH+G C pCp+
  Aqcoe1G420000.1.p 432 CGrklrcnNHKCPSPCHRGACAPCPL 457
                        666666669***************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500898.52182154IPR001841Zinc finger, RING-type
PROSITE patternPS01359082153IPR019786Zinc finger, PHD-type, conserved site
CDDcd060085.73E-6187235No hitNo description
PfamPF014220.0024199216IPR000967Zinc finger, NF-X1-type
SMARTSM004380.037199217IPR000967Zinc finger, NF-X1-type
CDDcd060085.98E-9241289No hitNo description
PfamPF014229.0E-5251269IPR000967Zinc finger, NF-X1-type
SMARTSM004382.3E-4251270IPR000967Zinc finger, NF-X1-type
CDDcd060085.34E-9294337No hitNo description
PfamPF014220.055304322IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0064304323IPR000967Zinc finger, NF-X1-type
CDDcd060082.09E-9348397No hitNo description
PfamPF014220.012358377IPR000967Zinc finger, NF-X1-type
SMARTSM004380.09358378IPR000967Zinc finger, NF-X1-type
CDDcd060085.59E-8401449No hitNo description
PfamPF014228.7E-4411429IPR000967Zinc finger, NF-X1-type
SMARTSM004380.013411430IPR000967Zinc finger, NF-X1-type
CDDcd060083.15E-11428476No hitNo description
PfamPF014220.0043432456IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0061438457IPR000967Zinc finger, NF-X1-type
SMARTSM0043816495516IPR000967Zinc finger, NF-X1-type
PfamPF014228.8505515IPR000967Zinc finger, NF-X1-type
PfamPF0142277524533IPR000967Zinc finger, NF-X1-type
SMARTSM0043878524566IPR000967Zinc finger, NF-X1-type
PfamPF014220.15606616IPR000967Zinc finger, NF-X1-type
SMARTSM0043812606639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.49649667IPR000967Zinc finger, NF-X1-type
PfamPF014225.6651666IPR000967Zinc finger, NF-X1-type
PfamPF014221.6712726IPR000967Zinc finger, NF-X1-type
SMARTSM004381.8712733IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009908Biological Processflower development
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000037Biological Processregulation of stomatal complex patterning
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 886 aa     Download sequence    Send to blast
MASSAKTAQQ QQHHVSHISS DSDTDSDTNT TTTITTVTHT DLEDSIFKSY IHISGGHSSS  60
SPQDLSKIQS FLISSRSGAL SCLICLEKIR ITDPTWSCIN GCYAVFHLLC IQSWARQASD  120
LAAERAIARL SREHFPIAAA NALENSNWNC PKCREEYSKT LIPKYYYCFC GKVENPISDP  180
WILPHSCGEV CNRPLKYNCG HYCLLLCHPG PCPSCPKLVK SRCFCGKIED VRRCGFKNFA  240
CNGVCLKVLD CGVHKCSENC HDGLCPPCRE KSVYRCECGK KKEERECFER KYRCENPCER  300
LLDCGKHVCD RGCHEGLCGE CPLQGKRTCP CGKRKYEGMA CDVAAPTCGS TCDKMLSCGF  360
HKCPERCHRG SCIETCRTVV MKSCRCGSLK KEVPCCQALV CERKCQRVRD CGRHACRRRC  420
CDGDCPPCSE ICGRKLRCNN HKCPSPCHRG ACAPCPLMVT ISCACGETRF EVPCGTEANQ  480
KPPKCPRPCG IAPLCRHAPN RKPHKCHYGA CPACRLICDE EFKCGHKCKL RCHGPKPPPN  540
LEFTLKPKKK KVNQQPEYTP GSPCPLCPEL VWRPCLGQHI GEERMVVCSD RSVFSCQNLC  600
GNLLTCGNHY CTKTCHALKS QTLSSGVHVK SESCEDCDLR CQKDRKLSCP HPCPLPCHPG  660
DCPLCKVLIK RSCHCGAMVH VFECTYYNSL SEEEQLKIRS CRGPCHRKLL NCSHLCPETC  720
HPGACPSPDK CSKKVNVRCS CQNLKKEWIC QEVQAAYRNS GRDPQDFSKT QFGIGLLPCD  780
SECARKLKVA DSELQLRKSK VIERKETDVT KPVPKRRKRR ERLQEDEQIS MLQAIGATLR  840
RCLLFILVVL VVIATLYFGY KGLLLLSDWM NEIEQKRQRR RFPGM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1813819PKRRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253736.10.0PREDICTED: NF-X1-type zinc finger protein NFXL2
SwissprotQ9FFK80.0NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBLA0A2G5CN280.0A0A2G5CN28_AQUCA; Uncharacterized protein
STRINGAquca_045_00093.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.10.0sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors