PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G433200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 700aa    MW: 81260.4 Da    PI: 8.3969
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G433200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.21.4e-2391177190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        +fYn+YAk++GFsvrk ++kk+ +n+ei+++++vC kegk +  ++   +++r+r + r gCka+++v+k+++gk++vt +++ HnH+l+
  Aqcoe1G433200.1.p  91 EFYNAYAKHAGFSVRKWAEKKN-KNKEIIRKEYVCFKEGKCSIVEEV--EKSRRRGSVREGCKARIVVSKSSNGKFVVTLIVEGHNHPLS 177
                        6****************99998.7777*************9998766..99999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.4E-2191177IPR004330FAR1 DNA binding domain
PfamPF105515.7E-31298391IPR018289MULE transposase domain
PROSITE profilePS5096610.868578614IPR007527Zinc finger, SWIM-type
SMARTSM005750.0016589617IPR006564Zinc finger, PMZ-type
PfamPF044345.7E-5590608IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MKHRIQKDRK TCFDVYVSAY DFEKGYSTSN RIRSYSCIYN LQVNGQGNDM EEVAMGENVD  60
ESSKCDIIPQ VPNDLKPMRG QEFSSLDEVL EFYNAYAKHA GFSVRKWAEK KNKNKEIIRK  120
EYVCFKEGKC SIVEEVEKSR RRGSVREGCK ARIVVSKSSN GKFVVTLIVE GHNHPLSTPR  180
KTHLLKSHRE VSSAHKCLSQ QLSMVNIPTH QQYNLLGVQA GGFENIGCTQ KDLYNYNRDV  240
RKELKGHDAE MFREYLKSEE EKNPSFTYNI DVDDEQRICR AFWADATSRR DYALYGDVVV  300
FDTTYDTNRY KLILAPLMGV NNHGQTIIFG CAFLSDETIP SFIWLLKQFL LAMPGDAPKM  360
IITDQDPTMT NAIAQTLPST FHRYCSWHIL NKFSEKLDAV KYSVYYKEFY YCIWNSKSKE  420
EFDLVWLELV QKSGLQDNKW LRSMFEIRLK WVPAYTKHVF SAEMTSSQRA ESSHSFFKKY  480
VGEDNSMVDF MVQFDRGLQK QRHETLIADN KDVIEKPKLK MLNDILVQMV DIYTNEIFYK  540
FQSELLESFN YKFQLINETD THRVCRTQRK NVETDKGRQV SYEKDSDYVS CTCNKFESMG  600
IPCRHVLAYL HKYTDFEKLP SHYILKSAEE KINLLVDSGR KEKKTSGTCG KRTREVVDNV  660
ADAELAEQMN CEEVATYREP NQVRAKGSGK RIKARSALK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272519.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5CJ920.0A0A2G5CJ92_AQUCA; Uncharacterized protein
STRINGAquca_050_00023.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-111FAR1-related sequence 5