PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G444000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YB

Protein Properties

Length: 160aa MW: 17524.4 Da PI: 4.4301

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G444000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41.1	4.4e-13	42	111	27	96
NF-YB 27 iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 + kd+ e + fi ++++ a+d c++ kr+tin+dd++ al ++ f +++ plk+ l +r +++ Aqcoe1G444000.1.p 42 LQKDTLVAFSESARIFIHYLSATANDVCKESKRQTINADDVFKALEEIEFPEFIGPLKACLDDFRRKNAA 111 556666777899999*************************************************987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.9E-32	11	152	IPR009072	Histone-fold
SuperFamily	SSF47113	1.61E-23	15	138	IPR009072	Histone-fold
Pfam	PF00808	3.2E-8	38	86	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MANSKAVAAV ELEELPKSIV RRVVKDKLSQ CSSEDGGGDL NLQKDTLVAF SESARIFIHY 60 LSATANDVCK ESKRQTINAD DVFKALEEIE FPEFIGPLKA CLDDFRRKNA AKKGGTVKTS 120 GAAKKRKVEK QAEPTENEDE VAEDMEEETN EDENGTPDD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	126	RRKNAAKKGGTVKTSGAAKKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245113.1	7e-66	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A2G5CAE4	1e-111	A0A2G5CAE4_AQUCA; Uncharacterized protein
STRING	Aquca_072_00118.1	1e-112	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	3e-39	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Aqcoe1G444000.1.p