PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G446200.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bZIP

Protein Properties

Length: 504aa MW: 56171.1 Da PI: 7.9226

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G446200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33	1.3e-10	190	225	4	39
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLe 39 k rr+++NReAAr+sR+RKka++++Le +L+ Aqcoe1G446200.1.p 190 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLS 225 6889*************************8655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-6	187	254	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.117	189	233	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.0E-8	190	226	IPR004827	Basic-leucine zipper domain
CDD	cd14708	5.98E-21	191	241	No hit	No description
SuperFamily	SSF57959	8.75E-7	191	233	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.2E-7	192	235	No hit	No description
PROSITE pattern	PS00036	0	194	209	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.6E-30	273	348	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MRSFCMAGHR VGGTGHLSDS GPSNQHTPYA VLQHDQLNPS TTFMDQQGSA FDFGELEEAI 60 ALQGVKFRDH DEAKRSFFTT RPATTLEMFP SWPLRFQQTP IGSSKSGEST DSGSAQNTIS 120 CKADSQLEPE SPISKKTIYQ PLDQQQQQQQ KQLVKMPSDI SRTGPQPNQQ NKTIEKRKGA 180 GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQIEQD LQRARSQGLF 240 LGAAGGGAAG NLSSGAAIFD MEYARWLDDD QRHMSELRTG LHSHLSDNDL RLILDGYLGH 300 YDEIFRLKGV AAKSDVFHLI TGMWITPAER CFLWMGGFRP SELLKMLMPQ LDPLTEQQLM 360 GICSLQQSSQ QAEDALSQGL EQLHHSLSET IGGGGGSLTD GSNVQNYMSQ MALALSQISN 420 LEGFVRQADN LRQQTLHQMR RILTVRQAAR CFLVIGEYYN RLRALSSIWA SRPRESMISD 480 DNSCQTTTDL QIVQAQQNHF SNF*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MRSFCMAGHR VGGTGHLSDS GPSNQHTPYA VLQHDQLNPS TTFMDQQGSA FDFGELEEAI  60
ALQGVKFRDH DEAKRSFFTT RPATTLEMFP SWPLRFQQTP IGSSKSGEST DSGSAQNTIS  120
CKADSQLEPE SPISKKTIYQ PLDQQQQQQQ KQLVKMPSDI SRTGPQPNQQ NKTIEKRKGA  180
GSTSEKPLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQIEQD LQRARSQGLF  240
LGAAGGGAAG NLSSGAAIFD MEYARWLDDD QRHMSELRTG LHSHLSDNDL RLILDGYLGH  300
YDEIFRLKGV AAKSDVFHLI TGMWITPAER CFLWMGGFRP SELLKMLMPQ LDPLTEQQLM  360
GICSLQQSSQ QAEDALSQGL EQLHHSLSET IGGGGGSLTD GSNVQNYMSQ MALALSQISN  420
LEGFVRQADN LRQQTLHQMR RILTVRQAAR CFLVIGEYYN RLRALSSIWA SRPRESMISD  480
DNSCQTTTDL QIVQAQQNHF SNF*

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001289788.1	0.0	transcription factor TGA2
Refseq	XP_010244798.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Refseq	XP_010244803.1	0.0	PREDICTED: transcription factor TGA2 isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A2G5CAH6	0.0	A0A2G5CAH6_AQUCA; Uncharacterized protein
STRING	Aquca_072_00138.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G446200.1.p

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]