PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G448800.19.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 466aa    MW: 52825.6 Da    PI: 6.7645
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G448800.19.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.2e-13124166346
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          W ++E+ ll++av+++G g+W+ Ia+++g +++  qc +++ +
  Aqcoe1G448800.19.p 124 DWNADEEILLLEAVEMYGLGDWEEIAEHVG-TKSKAQCNEHYTS 166
                         6*****************************.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.1E-12252461IPR016827Transcriptional adaptor 2
SMARTSM002916.2E-1161105IPR000433Zinc finger, ZZ-type
PfamPF005696.0E-1063104IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.81265108IPR000433Zinc finger, ZZ-type
SuperFamilySSF578503.18E-1665128No hitNo description
CDDcd023354.81E-2765113No hitNo description
PROSITE patternPS0135706794IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.5E-13117171IPR009057Homeodomain-like
PROSITE profilePS5129322.764120172IPR017884SANT domain
SMARTSM007176.9E-11121170IPR001005SANT/Myb domain
PfamPF002493.5E-12124165IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-9124166IPR009057Homeodomain-like
CDDcd001672.44E-11125167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0016573Biological Processhistone acetylation
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MNAHEHMHLP FGQIVKRIME RSRCALAATP DRTRKTTVAA SSSKQTAVGS ASADSKKVEG  60
KKALYHCNYC TKDISGKIRI KCAICPDFDL CVECFSVGAE LTPHKSDHPY QVMDNLSFPL  120
ISPDWNADEE ILLLEAVEMY GLGDWEEIAE HVGTKSKAQC NEHYTSFYLN SPHFPLPDMS  180
HVTGKNRKEL PSSVEGHTEN NKELSTLGEL RLMEPLYHSG FRTGKPALSP SRFNWFGAGF  240
RNISAAEGTV KKASGMDQIK HGRGFPNVKD SLVVPSIGFG GKKPELSSEE KPSLLELSGY  300
NPKRNEFDPE YDTDAEKSIA NLEFKDTDTE AEHELKLQML HAYNRRLDER KRRKDFVLER  360
NLLYPDPLAK DLSPQEKVLY DQYNVFMRFH SKEEHEELIK TVIGEHRMRK EFEERKEAQE  420
AGSHASAEAD KYFEHKRKKI AEESSCEMKG SGKVLQRAQG FIFFE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw3_E3e-39651805120Transcriptional adapter 2
6cw3_G3e-39651805120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1349354RKRRKD
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270206.11e-180PREDICTED: transcriptional adapter ADA2-like isoform X3
SwissprotQ75LL61e-153TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A2G5CAM60.0A0A2G5CAM6_AQUCA; Transcriptional adapter
STRINGAquca_072_00158.10.0(Aquilegia coerulea)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]