PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G454000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRF

Protein Properties

Length: 392aa MW: 43662.7 Da PI: 7.1371

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G454000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.8	5.1e-25	160	204	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRC ++v++g+k+CErH+hrgr+rsrk++e+ Aqcoe1G454000.1.p 160 DPEPGRCRRTDGKKWRCAKDVVAGQKYCERHMHRGRNRSRKPVES 204 79****************************************997 PP
2	QLQ	37.2	9.1e-14	88	120	3	35
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 F+ +Q+ +L+ Q+l++Ky++ ++P+P eL+ i Aqcoe1G454000.1.p 88 FSFTQWRELELQALIFKYMLVKAPIPVELIDSI 120 99***************************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	14.437	87	122	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	1.2E-9	88	120	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.471	160	204	IPR014977	WRC domain
Pfam	PF08879	9.1E-22	161	203	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MAYHVKQEWY EQYESEHLCC SKLPPRLIYD DTELPHQLSE SAALPLFVPE LNNTRITSLS 60 AFSDSTLTPS PTTTTTTTAR LARLRCCFSF TQWRELELQA LIFKYMLVKA PIPVELIDSI 120 KFSLPHNYPG CYLYQPLHLQ QYSYYKPSML RTGYWGNSVD PEPGRCRRTD GKKWRCAKDV 180 VAGQKYCERH MHRGRNRSRK PVESSTQPTA SGGLRTATLI GSSPSTTEAT GIHFALSVPA 240 PTPLNTRYPE IKQEIVLLED QCDNKYSENR TDGGQTRHFF DDWPRSQQEP NGININAKPE 300 NLPAGDCQPS SDFSLKLATG NGDEQSSRDG DIGTGEHNRL SWGTEWGNHQ MSSMGGPLAE 360 ALQHSASSSS PTSVLRGATH RSVSDLSGVS T*

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MAYHVKQEWY EQYESEHLCC SKLPPRLIYD DTELPHQLSE SAALPLFVPE LNNTRITSLS  60
AFSDSTLTPS PTTTTTTTAR LARLRCCFSF TQWRELELQA LIFKYMLVKA PIPVELIDSI  120
KFSLPHNYPG CYLYQPLHLQ QYSYYKPSML RTGYWGNSVD PEPGRCRRTD GKKWRCAKDV  180
VAGQKYCERH MHRGRNRSRK PVESSTQPTA SGGLRTATLI GSSPSTTEAT GIHFALSVPA  240
PTPLNTRYPE IKQEIVLLED QCDNKYSENR TDGGQTRHFF DDWPRSQQEP NGININAKPE  300
NLPAGDCQPS SDFSLKLATG NGDEQSSRDG DIGTGEHNRL SWGTEWGNHQ MSSMGGPLAE  360
ALQHSASSSS PTSVLRGATH RSVSDLSGVS T*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243928.1	1e-107	PREDICTED: growth-regulating factor 3
TrEMBL	A0A2G5D6T2	0.0	A0A2G5D6T2_AQUCA; Uncharacterized protein
STRING	Aquca_027_00414.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52910.1	1e-56	growth-regulating factor 4

Link Out ? help Back to Top
Phytozome	Aqcoe1G454000.1.p