PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G469800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 263aa    MW: 30061.9 Da    PI: 6.5971
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G469800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.2e-08205233127
                        --S---SGGGGTS..--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHgp 27 
                        ykt+lCrf+ +    +C +G+rC FaHgp
  Aqcoe1G469800.1.p 205 YKTKLCRFWVEHLdsFCYHGARCVFAHGP 233
                        9**********88**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.106.7E-12201238IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-7203238IPR000571Zinc finger, CCCH-type
SMARTSM003560.0021204233IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.573204234IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5205233IPR000571Zinc finger, CCCH-type
SMARTSM003562.5235262IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.207235262IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MDQYDYELFR GLELSNRKMK VLCETSLGLA YAAYLKAYFV EQDNENIREF KQLNAGSSHA  60
FANNIVVFLE DETSKLRNPE QFRAAKRELE GLGADIDIAQ KLMKKEDSDS SAKPPLSAPG  120
TAEQLKQEDS FATKRRSLLS EQGRLQRRLT EHEELLRRAY IFLTWANTEN LHLSLEFIDL  180
MRANVSTDYK APFPGYHALV AQGLYKTKLC RFWVEHLDSF CYHGARCVFA HGPDDLRVVA  240
CNEFIQSGSC SNRHSCSFFH PE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-07C3H family protein