PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G487500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB_related

Protein Properties

Length: 250aa MW: 28571.8 Da PI: 10.0707

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G487500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.1	1.3e-15	39	83	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT eE++++++a +++G + Wk+I ++g ++ q++s+ qky Aqcoe1G487500.1.p 39 RENWTDEEHDKFLEALHLFGRD-WKRIEDYVG-SKSVIQIRSHAQKY 83 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.5E-17	33	89	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.861	34	88	IPR017930	Myb domain
TIGRFAMs	TIGR01557	8.1E-18	37	86	IPR006447	Myb domain, plants
SMART	SM00717	2.4E-12	38	86	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	4.8E-7	38	79	IPR009057	Homeodomain-like
Pfam	PF00249	2.2E-13	39	83	IPR001005	SANT/Myb domain
CDD	cd00167	4.45E-10	41	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKIMNSRSLK RQFMARSTTN YTDIFSKKVR KPYTITKSRE NWTDEEHDKF LEALHLFGRD 60 WKRIEDYVGS KSVIQIRSHA QKYFLKIQKN GAIVHVPPPR PKRRAAHPYP QKPIKNASLV 120 HPSTLNCVAP RIIQWDDSAM LMNTASNESM SSQDDFIYHP SLEVPADIAL ETSVSLSDRS 180 FSGGSSSILS DMPQQGMPDF AEVYNFIGSI FDLYKKGHLQ KLKKMDQINL ETVLILMRNL 240 TINLASPHF*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019053625.1	1e-101	PREDICTED: protein REVEILLE 8 isoform X1
Swissprot	Q8RWU3	4e-88	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A2G5D5B5	1e-173	A0A2G5D5B5_AQUCA; Uncharacterized protein
STRING	Aquca_027_00135.1	1e-173	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.2	1e-68	MYB_related family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G487500.1.p

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]