PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G487700.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 556aa    MW: 62628.7 Da    PI: 6.9315
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G487700.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.3e-17233282155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Aqcoe1G487700.3.p 233 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 282
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.7E-9233282IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16233291IPR016177DNA-binding domain
SMARTSM003801.3E-32234296IPR001471AP2/ERF domain
PROSITE profilePS5103217.794234290IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-17234291IPR001471AP2/ERF domain
CDDcd000182.50E-11234292No hitNo description
CDDcd000183.35E-13329374No hitNo description
SuperFamilySSF541712.55E-6329373IPR016177DNA-binding domain
SMARTSM003801.8E-13330378IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MLDLNVISAE TIHRKEEEEE VDVISLNKKK KMMMLMMMNN NQNSNKDDLS AGTSNSSSVV  60
NAEVSSSNGA DEDSCSTHHH NNNNKFVVTT TTTATSSNST SVTWKEKDVF AIEFDILKKE  120
DFSREIETIV VDDEEEEDRN RNRNRNRNLI LQSDFVTKQF FPMTCVDELD LSLPVATMKA  180
ALSRTQSMDL CFTRSNVVGD LSEIRVLEQQ QQQQQQQKPP VKKSRRGPRS RSSQYRGVTF  240
YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYEEDMKQ  300
FDQQMKNLTK EEFVHILRRH STGFSRGSSK YRGVTLHKCG RWEARMGQFL GKKAYDKAAI  360
KCNGREAVTN FEPSTYDSEI MEIENGGNAC NLDLNLGITP PSSADDLNQS ESVGAFNLHV  420
DPLNLLDAKR ARTDNPSLTT LGGQPLYGLA MGSKHPPMWN GGYPSFFPNY EQERKIEKRV  480
EVGSRRLSNW AWQLHGHIDD STPMPLFSTA ASSGFSSSST SVSAAALHPP HPPHISMTHY  540
GYYPPSTTSQ HHYRS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010260158.11e-161PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A2G5D5B40.0A0A2G5D5B4_AQUCA; Uncharacterized protein
STRINGAquca_027_00133.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.19e-89related to AP2.7