PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G489000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YB

Protein Properties

Length: 158aa MW: 17094.1 Da PI: 5.8307

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G489000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	187.9	7.4e-59	24	121	1	98
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 vreqdr+lPian+srimkk+lPan+ki+kdaketvqecvsefisf+tseasdkcqrekrktingddllwa+atlGfedy++plkvyl++yre Aqcoe1G489000.1.p 24 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLARYRE 115 69**************************************************************************************** PP NF-YB 93 legekk 98 +eg++k Aqcoe1G489000.1.p 116 MEGDTK 121 *975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.1E-55	19	143	IPR009072	Histone-fold
SuperFamily	SSF47113	5.43E-41	27	133	IPR009072	Histone-fold
Pfam	PF00808	2.7E-28	30	94	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	1.2E-20	58	76	No hit	No description
PROSITE pattern	PS00685	0	61	77	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	1.2E-20	77	95	No hit	No description
PRINTS	PR00615	1.2E-20	96	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MADGPASPAG GSHESGEQSP RSNVREQDRY LPIANISRIM KKALPANGKI AKDAKETVQE 60 CVSEFISFIT SEASDKCQRE KRKTINGDDL LWAMATLGFE DYIDPLKVYL ARYREMEGDT 120 KGSVKGGDGS GRREAVSGQA GQNSQAQHLM LPMQGTE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	2e-48	23	115	1	93	NF-YB
4awl_B	2e-48	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	2e-48	23	115	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
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Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021736165.1	1e-97	nuclear transcription factor Y subunit B-1-like isoform X1
Refseq	XP_021736166.1	1e-97	nuclear transcription factor Y subunit B-10-like isoform X2
Refseq	XP_021736167.1	1e-97	nuclear transcription factor Y subunit B-10-like isoform X2
Swissprot	Q8VYK4	4e-82	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A2G5D584	1e-113	A0A2G5D584_AQUCA; Uncharacterized protein
STRING	Aquca_027_00124.1	1e-114	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	2e-84	nuclear factor Y, subunit B8

Link Out ? help Back to Top
Phytozome	Aqcoe1G489000.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]