PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G494900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 488aa    MW: 54038.9 Da    PI: 6.7339
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G494900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B376.92.3e-24172273199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F   +
  Aqcoe1G494900.1.p 172 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELIAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFL--R 260
                        99****************************963.3445679************************************************..4 PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                         +++el+++++r+
  Aqcoe1G494900.1.p 261 GEDGELRLGIRRT 273
                        49999*****996 PP
2Auxin_resp1262.5e-41298380183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        +a+a+stks+F+++Y+Pras++eFv++++k+ k++++++s+GmRfkm+fe+ed +err+sG+v+g+ d+dp+rWp+SkWr+Lk
  Aqcoe1G494900.1.p 298 VANAISTKSMFHIFYSPRASPAEFVIPYQKFAKSITHPLSIGMRFKMRFEKEDTAERRCSGVVTGIGDVDPYRWPDSKWRCLK 380
                        689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.3E-41164286IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-44166294IPR015300DNA-binding pseudobarrel domain
CDDcd100171.77E-22170272No hitNo description
SMARTSM010191.7E-23172274IPR003340B3 DNA binding domain
PfamPF023622.7E-22172273IPR003340B3 DNA binding domain
PROSITE profilePS5086313.155172274IPR003340B3 DNA binding domain
PfamPF065075.3E-36298380IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MEIDLNQVLK EGERVGYCYG DCDKSGGGGG SGSGWCSLSS SSSCCSSTSS DSSMSSSIYF  60
ELWHACAGPL TSLPKKGSVV VYFPQGHLEQ AASTSSFPCF EMPTFGLQAH IFCRVVNVQL  120
LANKENDEVY TQVTLFPQPE CGERKLDDNG HEDAGLEEEG TEGSASKTPH MFCKTLTASD  180
TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELIAKDLHGV EWRFRHIYRG QPRRHLLTTG  240
WSIFVSQKNL TSGDAVLFLR GEDGELRLGI RRTGRPRNSL PNSILSSQNV HLNILSPVAN  300
AISTKSMFHI FYSPRASPAE FVIPYQKFAK SITHPLSIGM RFKMRFEKED TAERRCSGVV  360
TGIGDVDPYR WPDSKWRCLK VRWDEDVLSD NLERVSPWEI EPSISLPGLS APSVPRLKKP  420
RTNMPPNSPN NPLAGGESLD FDESVRYSKV LQGQEKVDLR LPLCNGGGGV EINHPLDFQM  480
HRQCIEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-126414022354Auxin response factor 1
4ldw_A1e-126414022354Auxin response factor 1
4ldw_B1e-126414022354Auxin response factor 1
4ldx_A1e-1265440215354Auxin response factor 1
4ldx_B1e-1265440215354Auxin response factor 1
4ldy_A1e-1265440215354Auxin response factor 1
4ldy_B1e-1265440215354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010253601.10.0PREDICTED: auxin response factor 4-like isoform X4
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2G5D5050.0A0A2G5D505_AQUCA; Auxin response factor
STRINGAquca_027_00067.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]