PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G496900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 358aa    MW: 40960 Da    PI: 8.6659
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G496900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1691.5e-52121391128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhP+deel+v+yL++k+++ ++++ ++++evd+yk++Pw+Lp k++ +++ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++
  Aqcoe1G496900.1.p  12 LPPGFRFHPSDEELIVFYLRNKATSCPIPA-SIVAEVDLYKYNPWELPDKASFGDEEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKPI 102
                        79****************************.89***************988899************************************** PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        l++ +++ +g+kk Lvfykgr pkg+kt+W+mheyrl
  Aqcoe1G496900.1.p 103 LTAkGSQSIGVKKALVFYKGRPPKGVKTNWIMHEYRL 139
                        99857788***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-6410166IPR003441NAC domain
PROSITE profilePS5100561.51112166IPR003441NAC domain
PfamPF023654.4E-2713139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MERQQPSSNI QLPPGFRFHP SDEELIVFYL RNKATSCPIP ASIVAEVDLY KYNPWELPDK  60
ASFGDEEWYF FSPRDRKYPN GARPNRAAAS GYWKATGTDK PILTAKGSQS IGVKKALVFY  120
KGRPPKGVKT NWIMHEYRLL DNMIKPSKSR SSMRLDDWVL CRVRQKDNLP RTTWEDQNIS  180
YSQPPNYYYP KLDEPPQKSA DPTFDIIANY RNNGCPMLAY ILSSNPDAPC IDTNSTLSFQ  240
GGNGDNNCTS KYEEVSDMGS SLITDSSINS FFNPLKRKPK ESQPENKMIH EKYANPLPSS  300
KTVAKKSTDN LRFCDQYLPP DNIFSPNTSN LNIKFQELNT TKELYDDLNK YSFQYQH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-7011686167NO APICAL MERISTEM PROTEIN
1ut4_B1e-7011686167NO APICAL MERISTEM PROTEIN
1ut7_A1e-7011686167NO APICAL MERISTEM PROTEIN
1ut7_B1e-7011686167NO APICAL MERISTEM PROTEIN
3swm_A1e-7011689170NAC domain-containing protein 19
3swm_B1e-7011689170NAC domain-containing protein 19
3swm_C1e-7011689170NAC domain-containing protein 19
3swm_D1e-7011689170NAC domain-containing protein 19
3swp_A1e-7011689170NAC domain-containing protein 19
3swp_B1e-7011689170NAC domain-containing protein 19
3swp_C1e-7011689170NAC domain-containing protein 19
3swp_D1e-7011689170NAC domain-containing protein 19
4dul_A1e-7011686167NAC domain-containing protein 19
4dul_B1e-7011686167NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007027296.21e-122PREDICTED: NAC domain-containing protein 2 isoform X1
TrEMBLA0A2G5D4X60.0A0A2G5D4X6_AQUCA; Uncharacterized protein
STRINGAquca_027_00052.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-82NAC domain containing protein 25