PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G498500.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 230aa MW: 26220.2 Da PI: 10.2327

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G498500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.6	5.5e-19	137	225	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v+ +l lp +f++++ +k ++ t+tl desg++W + rk++ l++GW +F ++++L +gD +vF+l++ +ef Aqcoe1G498500.1.p 137 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF-- 220 89*******************9994.32.5569***********656665....*********************9987777.. PP EEEEE CS B3 93 vvkvf 97 +v ++ Aqcoe1G498500.1.p 221 KVYII 225 77665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.3E-23	131	226	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.75E-26	131	227	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.11E-29	135	226	No hit	No description
SMART	SM01019	3.7E-27	137	228	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.5E-17	137	225	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.099	137	228	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET 60 ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRIFLGRHFN RRTDLSNRVY ASDEARLKAI 120 EKAEELEAKL ENGSPSFVKS MLQSHVTGGF WLGLPSHFCR DFLPKSDETV TLVDESGEEW 180 PTVYLARKTG LSGGWMGFSR DHKLVDGDAL VFELVKPTEF KVYIIKVDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023728492.1	1e-98	B3 domain-containing protein Os06g0194400-like
Swissprot	Q1G3M3	4e-70	Y3918_ARATH; B3 domain-containing protein At3g19184
Swissprot	Q69V36	1e-70	Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBL	A0A2G5DRL0	1e-168	A0A2G5DRL0_AQUCA; Uncharacterized protein
STRING	Aquca_016_00429.1	1e-169	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	1e-63	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G498500.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]