PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe1G498500.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Protein Properties

Length: 225aa MW: 25633.5 Da PI: 10.1336

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe1G498500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	59.7	5.2e-19	132	220	1	97
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k +++s+v+ +l lp +f++++ +k ++ t+tl desg++W + rk++ l++GW +F ++++L +gD +vF+l++ +ef Aqcoe1G498500.3.p 132 FVKSMLQSHVTGGFWLGLPSHFCRDFL-PK-SDETVTLVDESGEEWPTVYLARKTG----LSGGWMGFSRDHKLVDGDALVFELVKPTEF-- 215 89*******************9994.32.5569***********656665....*********************9987777.. PP EEEEE CS B3 93 vvkvf 97 +v ++ Aqcoe1G498500.3.p 216 KVYII 220 77665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.1E-23	126	221	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-26	126	222	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.40E-30	130	221	No hit	No description
PROSITE profile	PS50863	14.099	132	223	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-27	132	223	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.3E-17	132	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MVKAAKQTAY EQIRQQRLEE NKKRMEELNL TQLARAVTIA ASPKPSPMKR VKPRIPRQET 60 ALIQVRRSSR VAKNPAPVYK EVLLDILERP RRHFNRRTDL SNRVYASDEA RLKAIEKAEE 120 LEAKLENGSP SFVKSMLQSH VTGGFWLGLP SHFCRDFLPK SDETVTLVDE SGEEWPTVYL 180 ARKTGLSGGW MGFSRDHKLV DGDALVFELV KPTEFKVYII KVDD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024973293.1	1e-100	B3 domain-containing protein Os06g0194400-like
Swissprot	Q1G3M3	8e-73	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2G5DRL0	1e-161	A0A2G5DRL0_AQUCA; Uncharacterized protein
STRING	Aquca_016_00429.1	1e-162	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-66	B3 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe1G498500.3.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]