PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G500100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 247aa    MW: 28366 Da    PI: 8.9837
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G500100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-18109157254
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                        +++GVr+++ +grW+AeI+dp+    r kr++lg+f+taeeAa  +++a+  ++
  Aqcoe1G500100.1.p 109 RFRGVRRRP-WGRWAAEIQDPV----RrKRVWLGTFDTAEEAATVYDKAAVMFK 157
                        79*******.**********63....45*********************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.3E-482245IPR017392AP2/ERF transcription factor ERF/PTI6
CDDcd000184.68E-30108166No hitNo description
PROSITE profilePS5103224.144109166IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-22109167IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-29109167IPR001471AP2/ERF domain
SMARTSM003806.1E-33109172IPR001471AP2/ERF domain
PfamPF008476.5E-12109154IPR001471AP2/ERF domain
PRINTSPR003671.6E-10110121IPR001471AP2/ERF domain
PRINTSPR003671.6E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTVSSPVKFS EHVLSTTKLL HRQKSSSGET RQKVVRIIFT DVDATDSSSD EEEDFVRRVK  60
RHVREIDISI QQDDKVCRKN QKMKKKRFMK LPVISSPPPP SEKANEQKRF RGVRRRPWGR  120
WAAEIQDPVR RKRVWLGTFD TAEEAATVYD KAAVMFKGPD AVTNFPSKIK TAQNENSAAT  180
VKSPTSVLGY SDLTPFSNFD VDESFGFDFD FEFQFPFPEF DLPKKYGVQD EFGEFDIDFF  240
SLEAIR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-191061721178Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1113132RRRPWGRWAAEIQDPVRRKR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010252020.16e-69PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046822e-55PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A200QTC65e-77A0A200QTC6_9MAGN; AP2/ERF domain
STRINGXP_010252020.12e-68(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.14e-23cytokinin response factor 4