PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe1G500700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 351aa    MW: 39451.4 Da    PI: 9.6734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe1G500700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.13.3e-18141231199
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f+k +++s+v +  +l lp +f+e+h   +  ++t+ led +g ++e  +    k +++ l++GW++F+ a+++++gD +vF+l+++++f  
  Aqcoe1G500700.1.p 141 FVKSMVRSHVYSCFWLGLPAEFCEKHL--PSDDVTMLLEDADGLEYESIY----KAEKHGLSGGWRGFALAHKIDDGDALVFQLIETERF-- 224
                        89************************4..336789***************....444466*************************98999.. PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v++f++
  Aqcoe1G500700.1.p 225 KVHIFKA 231
                        9999975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-21134231IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-23134231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.76E-25139230No hitNo description
SMARTSM010194.7E-23141232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.717141232IPR003340B3 DNA binding domain
PfamPF023621.0E-16141231IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MARIGGDNNK DSSYEEVRKQ RVEENKKRLE ELGILSLSKS LSESTKLVQK SPKPKSKTSN  60
TRFNTEVRRS SRERKPVASY AEEFSIELPR QHKRSKPAGS WTSYLARPVD EVTFASYEEK  120
IYAKQSAENF RSTLESGHPS FVKSMVRSHV YSCFWLGLPA EFCEKHLPSD DVTMLLEDAD  180
GLEYESIYKA EKHGLSGGWR GFALAHKIDD GDALVFQLIE TERFKVHIFK ARELHTTEAA  240
NNSNKKATKN SNKKASKNSN KKGTNDRKDV ELKKDVKSAA EIKDHSSSLM VNLDGGLSLV  300
AICSNEETSE PKDLKSYEDG EGSISPLVEF DSGLKCTKRT STRLSRKRKI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2R6PPL84e-90A0A2R6PPL8_ACTCH; B3 domain-containing protein
STRINGVIT_06s0004g08270.t012e-89(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.12e-57B3 family protein