PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G000800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WOX
Protein Properties Length: 244aa    MW: 26049.1 Da    PI: 8.1086
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G000800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.14.2e-152686257
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       r+R+t+++eq+ +Le+ F++   +p ++e  ++ k l    ++ + +V++WFqNrR + ++
  Aqcoe2G000800.1.p 26 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgSVGDVNVFYWFQNRRSRSRR 86
                       89*****************99*************************************997 PP
2Wus_type_Homeobox105.92.6e-342588265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d NVfyWFQNr++R+r++q
  Aqcoe2G000800.1.p 25 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDVNVFYWFQNRRSRSRRRQ 88
                       589***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-142192IPR009057Homeodomain-like
PROSITE profilePS5007111.1592287IPR001356Homeobox domain
SMARTSM003891.2E-52491IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-82690IPR009057Homeodomain-like
PfamPF000468.1E-132686IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048830Biological Processadventitious root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MEGQDASCPS PSSRPAVGSS AGSPVRSRWT PKPEQILILE SIFNSGMVNP PKDETVRIRK  60
LLEKFGSVGD VNVFYWFQNR RSRSRRRQRQ IQAVGGFASS QHIYPPTSPC VVGTSSSSSS  120
SSSSTSTSAG GGAVNANDLF SISQQMSSPH MDQNSILCPS SDMQLYQSGG SIVTTTTTVF  180
INGIATEVPS GSFDLSAMFG QDHHHHVMLV HSSTGVPVPV NEYGILMQSL QMGESYFLVA  240
GPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in crown root development (PubMed:26307379, PubMed:29740464). Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system (PubMed:26307379, PubMed:29740464). Regulates the expression of genes required for crown root development, and hormone-responsive genes involved in cytokinin signaling (e.g. RR1, RR2, RR3 and RR4), and auxin signaling (e.g. IAA5, IAA11, IAA23 and IAA31) (PubMed:26307379). Functions dowstream of the auxin biosynthetic genes YUCCA1 in the promotion of crown root development (PubMed:29740464). {ECO:0000269|PubMed:26307379, ECO:0000269|PubMed:29740464}.
UniProtTranscription factor which may be involved in developmental processes. Promotes the development of crown roots (both initiation and elongation), main components of the fibrous root system, by regulating the expression of genes required for crown root development and hormone-responsive genes involved in cytokinin (e.g. RR1, RR2, RR3 and RR4) and auxin (e.g. IAA5, IAA11, IAA23 and IAA31) signaling. {ECO:0000250|UniProtKB:Q0D3I7}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019054443.13e-68PREDICTED: WUSCHEL-related homeobox 11
SwissprotB8B6442e-58WOX11_ORYSI; WUSCHEL-related homeobox 11
SwissprotQ0D3I72e-58WOX11_ORYSJ; WUSCHEL-related homeobox 11
TrEMBLA0A2G5DYY11e-80A0A2G5DYY1_AQUCA; Uncharacterized protein
STRINGAquca_014_00949.12e-81(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03660.11e-34WUSCHEL related homeobox 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhao Y, et al.
    The Interaction between Rice ERF3 and WOX11 Promotes Crown Root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
    Plant Cell, 2015. 27(9): p. 2469-83
    [PMID:26307379]
  3. Zhang T, et al.
    The YUCCA-Auxin-WOX11 Module Controls Crown Root Development in Rice.
    Front Plant Sci, 2018. 9: p. 523
    [PMID:29740464]