PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G001600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 307aa    MW: 34667.8 Da    PI: 5.0625
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G001600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.27.9e-50141411128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeelv +yL++k++ ++l++  +i+e+d+y+++P +Lp ++  ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk++
  Aqcoe2G001600.1.p  14 LPPGFRFHPTDEELVLHYLCRKISYQTLPV-PIIAEIDLYRYNPCQLPDMALFGTKEWYFFTPRDRKYPNGSRPNRAAGTGYWKATGADKPI 104
                        79****************************.88***************76667899************************************ PP

                NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          + + ++ g+kk Lvfy+g+apkg kt+W+mheyrl
  Aqcoe2G001600.1.p 105 RPTgSARHLGIKKALVFYSGKAPKGIKTNWIMHEYRL 141
                        99856677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-628168IPR003441NAC domain
PROSITE profilePS5100558.73814168IPR003441NAC domain
PfamPF023658.0E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MMMRETDAEA DLNLPPGFRF HPTDEELVLH YLCRKISYQT LPVPIIAEID LYRYNPCQLP  60
DMALFGTKEW YFFTPRDRKY PNGSRPNRAA GTGYWKATGA DKPIRPTGSA RHLGIKKALV  120
FYSGKAPKGI KTNWIMHEYR LAEPNRPTNT KGGSLRLDDW VLCRIYNKKN NWHTTRIFKE  180
DSPVNSFQAV EEGGSDSFTT SESDVDNDTY TELNNDGLAQ ANPFQALDSM QQTTTEVKGV  240
SHMGECMKSE DNDWFMDLNL DDLQNSISAF GASQDLNCLD YSSVGFTFST LPDQPTSLLE  300
HMNISA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-9021723172Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010257746.11e-141PREDICTED: NAC domain-containing protein 68-like
SwissprotQ52QH41e-105NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A2G5DYX70.0A0A2G5DYX7_AQUCA; Uncharacterized protein
STRINGAquca_014_00941.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.12e-88NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]