PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G007300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 657aa    MW: 74868.3 Da    PI: 9.2449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G007300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.6e-09599643345
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                         W++  +  l++a k ++++   +W+++a+ ++ g+t +qck ++ 
  Aqcoe2G007300.1.p 599 VWSAVQERALIQALKTFPKEasqRWERVAASVP-GKTVNQCKKKFA 643
                        7********************************.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465656.15E-2094175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1103.8E-2194198IPR001623DnaJ domain
SMARTSM002714.7E-1796171IPR001623DnaJ domain
CDDcd062574.82E-1297168IPR001623DnaJ domain
PROSITE profilePS5007618.4197179IPR001623DnaJ domain
PfamPF002265.1E-1897176IPR001623DnaJ domain
PRINTSPR006256.7E-8102120IPR001623DnaJ domain
PRINTSPR006256.7E-8120135IPR001623DnaJ domain
PRINTSPR006256.7E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
Gene3DG3DSA:1.10.10.601.7E-4465512IPR009057Homeodomain-like
SuperFamilySSF466891.35E-7465513IPR009057Homeodomain-like
PROSITE profilePS512936.787468523IPR017884SANT domain
SMARTSM007172.7E-5469522IPR001005SANT/Myb domain
CDDcd001672.39E-4472512No hitNo description
SuperFamilySSF466898.22E-9595645IPR009057Homeodomain-like
PROSITE profilePS512939.976595650IPR017884SANT domain
SMARTSM007177.5E-9596648IPR001005SANT/Myb domain
PfamPF002498.2E-8599642IPR001005SANT/Myb domain
CDDcd001675.71E-7600646No hitNo description
Gene3DG3DSA:1.10.10.601.7E-5600642IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAPQLRLRRI SYSKDLVDGQ PVYVSSNCFP VKATKLEPAG HMFHSVALKL SGYFKEEVVK  60
TDDQNVPSDK GQSYMASSDS YSSKGKKKSG GEGQQQDHYA LLGLGHLRFL ATEDQIRKSY  120
RETALKHHPD KQAALLLSEE GEAAKQAKKE EIENNFKSIQ EAYEVLIDPV KRRIYDSTDE  180
FDDEIPTDCA PQDFFKVFGP AFMRNGRWSV SQPIPSLGEE NSPLEDVDSF YNFWYSFKSW  240
REFPHADDFD LEQAESRDHK RWMERQNAKL REKARKEEYA RVRSLVDNAY KRDPRILRRK  300
EEEKAEKKRR KESKYLAKRL QEEEAARAAE EERRRKEEED RLAAEAAAKM KKVKEKEKKL  360
LRKERTRLRT LSAPVVVKRL LELKEDDVES LCMSLDIDRM RSLCDEIEHK AGTERAELLK  420
QALGGNISAN GVKKEENNIP SQNGSIDANG SGAGLHSKSE NPFSNYEKKD KPWNKEEIEL  480
LRKGMLKYPK GTSRRWEVIS EFIGTGRSVE EILKATKTVL LQKPDSAKAF DSFLEKRKPA  540
PTIASPLTTR QETEGTMPPV DQPEANSPEK VDTKQPSSSA GTDQNPENTT ANGVSDPDVW  600
SAVQERALIQ ALKTFPKEAS QRWERVAASV PGKTVNQCKK KFALLKESFR NKKTVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A1e-1919329620123Zuotin
5dje_B1e-1919329620123Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306310KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010067661.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A2G5DYM20.0A0A2G5DYM2_AQUCA; Uncharacterized protein
STRINGAquca_014_00889.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain