PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G008600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 300aa    MW: 31644.7 Da    PI: 9.846
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G008600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.8e-063659225
                       -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                       k ++C  f+ t  C++G++C+F H
  Aqcoe2G008600.1.p 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                       7789******************** PP
2zf-CCCH20.11.1e-061141261426
                        --TTTTT-SS-SS CS
            zf-CCCH  14 tCkyGdrCkFaHg 26 
                         Ck+Gd+C+FaH 
  Aqcoe2G008600.1.p 114 GCKFGDKCHFAHN 126
                        6***********7 PP
3zf-CCCH35.71.5e-11266290126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f + G C +GdrC+FaHg
  Aqcoe2G008600.1.p 266 FKTKLCENFNK-GSCTFGDRCHFAHG 290
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-63561IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-83659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1298130IPR000571Zinc finger, CCCH-type
SMARTSM003560.76100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.939100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-7100131IPR000571Zinc finger, CCCH-type
PfamPF146080.066115125No hitNo description
SuperFamilySSF547915.17E-15163242IPR004088K Homology domain, type 1
SMARTSM003229.3E-12171241IPR004087K Homology domain
PROSITE profilePS5008414.424172236IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.106.1E-16172240IPR004088K Homology domain, type 1
PfamPF000138.7E-12174238IPR004088K Homology domain, type 1
CDDcd001056.84E-14176236No hitNo description
Gene3DG3DSA:4.10.1000.106.4E-16263296IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-9264295IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7265291IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69265292IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9266290IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEARKRGRSD GFLNGNGGFK RNKQEMENFP TGIGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGINAVAH MTNLGGNHSH PPSSRNTMGP PSSHNGASPA VKTRMCNKLN SPEGCKFGDK  120
CHFAHNEREL GKSTGPSHED PRVMSGPMSG RFPGRHEPPP PGMAAAASFG ASATAKISVD  180
ASLAGAIIGK GGVNSKQICR VTGAKLSIRE HESDPNLKNI ELEGTFDQIK QASAMVRELI  240
VNIGSAMGPP PSHTPATHHA PAANNFKTKL CENFNKGSCT FGDRCHFAHG ASELRKSGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-153PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-116C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G5DYM60.0A0A2G5DYM6_AQUCA; Uncharacterized protein
STRINGAquca_014_00875.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-84C3H family protein