PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G008600.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 230aa    MW: 24054.1 Da    PI: 9.5107
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G008600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.68e-0744561426
                       --TTTTT-SS-SS CS
            zf-CCCH 14 tCkyGdrCkFaHg 26
                        Ck+Gd+C+FaH 
  Aqcoe2G008600.2.p 44 GCKFGDKCHFAHN 56
                       6***********7 PP
2zf-CCCH36.21e-11196220126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +kt+lC +f + G C +GdrC+FaHg
  Aqcoe2G008600.2.p 196 FKTKLCENFNK-GSCTFGDRCHFAHG 220
                        69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.109.7E-132860IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-73061IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.9393058IPR000571Zinc finger, CCCH-type
SMARTSM003560.763057IPR000571Zinc finger, CCCH-type
PfamPF146080.0484555No hitNo description
SuperFamilySSF547912.89E-1593172IPR004088K Homology domain, type 1
SMARTSM003229.3E-12101171IPR004087K Homology domain
PROSITE profilePS5008414.424102166IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.103.7E-16102170IPR004088K Homology domain, type 1
PfamPF000135.4E-12104168IPR004088K Homology domain, type 1
CDDcd001053.44E-14106166No hitNo description
Gene3DG3DSA:4.10.1000.104.3E-16193226IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-9194225IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-7195221IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.69195222IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9196220IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTNLGGNHSH PPSSRNTMGP PSSHNGASPA VKTRMCNKLN SPEGCKFGDK CHFAHNEREL  60
GKSTGPSHED PRVMSGPMSG RFPGRHEPPP PGMAAAASFG ASATAKISVD ASLAGAIIGK  120
GGVNSKQICR VTGAKLSIRE HESDPNLKNI ELEGTFDQIK QASAMVRELI VNIGSAMGPP  180
PSHTPATHHA PAANNFKTKL CENFNKGSCT FGDRCHFAHG ASELRKSGM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018860219.11e-113PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-84C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2G5DYM61e-164A0A2G5DYM6_AQUCA; Uncharacterized protein
STRINGAquca_014_00875.11e-165(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-56C3H family protein