PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G015900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 365aa    MW: 40858.2 Da    PI: 7.6094
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G015900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH171.1e-051031426
                       ---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                       +lC+ f+  G C  Gd+C F+H+
  Aqcoe2G015900.1.p 10 VLCK-FFVHGACLKGDNCEFSHD 31
                       79**.7777*************5 PP
2zf-CCCH25.13e-083959526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C f++r G C+yG+rC++ H+
  Aqcoe2G015900.1.p 39 ICTFYQR-GVCSYGSRCRYEHV 59
                       7**9999.***********997 PP
3zf-CCCH22.61.8e-07145167326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C+ fa+ G+C++G+rC+ +Hg
  Aqcoe2G015900.1.p 145 RPICS-FAAAGECPRGERCPHIHG 167
                        79999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003568.3E-6732IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-71031IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-41134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5261133IPR000571Zinc finger, CCCH-type
PfamPF156635.5E-81269No hitNo description
PROSITE profilePS5010314.3523461IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-43560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53558IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43958IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45142169IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4143168IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4145167IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.21E-13203275No hitNo description
Gene3DG3DSA:3.30.40.104.8E-10205270IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00106210270No hitNo description
PfamPF000974.1E-7211268IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.283211269IPR001841Zinc finger, RING-type
SMARTSM001843.5E-7211268IPR001841Zinc finger, RING-type
PROSITE patternPS005180235244IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.36298326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281298327IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MNCGVRSFGV LCKFFVHGAC LKGDNCEFSH DWKDQTNNIC TFYQRGVCSY GSRCRYEHVK  60
ASRPQTTISS SSTISVRPKA SNPVEVTSPR AFVAGEANSI SSLPAELSAL SRPFFPPAWK  120
QDSIDHNLQD DDIVGEVTNV DPADRPICSF AAAGECPRGE RCPHIHGDLC PTCGKHCLHP  180
YRPDERDEHI ITCERKKKQL DALKYSQEIE CSVCLDRVLS KPTAAERKFG LLSECDHPFC  240
ISCIRNWRSN SPTSGMDINS ALRACPICRK LSYFVIPSVI WYANQEEKQE IVNNYKAKLS  300
SIDCRYFDFG NGSCPFGTSC FYKHAYRDGR LEEVALRHLG AEDGNTVIAK DIRLSDFLSN  360
LRLR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026417872.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_026417873.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-171C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2G5DY880.0A0A2G5DY88_AQUCA; Uncharacterized protein
STRINGAquca_014_00814.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-153C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]