PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G015900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 360aa    MW: 40394.7 Da    PI: 7.6245
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G015900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.12.3e-06426326
                       S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                       ++lC+ f+  G C  Gd+C F+H+
  Aqcoe2G015900.2.p  4 RVLCK-FFVHGACLKGDNCEFSHD 26
                       79***.7777*************5 PP
2zf-CCCH25.13e-083454526
                       --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                       +C f++r G C+yG+rC++ H+
  Aqcoe2G015900.2.p 34 ICTFYQR-GVCSYGSRCRYEHV 54
                       7**9999.***********997 PP
3zf-CCCH22.61.8e-07140162326
                        S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                        +++C+ fa+ G+C++G+rC+ +Hg
  Aqcoe2G015900.2.p 140 RPICS-FAAAGECPRGERCPHIHG 162
                        79999.**************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.784128IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-8426IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-4629IPR000571Zinc finger, CCCH-type
PfamPF156634.3E-8764No hitNo description
PROSITE profilePS5010314.3522956IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-53053IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-43055IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.45137164IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-4138163IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4140162IPR000571Zinc finger, CCCH-type
SuperFamilySSF578502.21E-13198270No hitNo description
Gene3DG3DSA:3.30.40.104.7E-10200265IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001628.60E-4205265No hitNo description
SMARTSM001843.5E-7206263IPR001841Zinc finger, RING-type
PROSITE profilePS5008912.283206264IPR001841Zinc finger, RING-type
PfamPF000974.0E-7206263IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180230239IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.281293322IPR000571Zinc finger, CCCH-type
SMARTSM003560.36293321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MSNRVLCKFF VHGACLKGDN CEFSHDWKDQ TNNICTFYQR GVCSYGSRCR YEHVKASRPQ  60
TTISSSSTIS VRPKASNPVE VTSPRAFVAG EANSISSLPA ELSALSRPFF PPAWKQDSID  120
HNLQDDDIVG EVTNVDPADR PICSFAAAGE CPRGERCPHI HGDLCPTCGK HCLHPYRPDE  180
RDEHIITCER KKKQLDALKY SQEIECSVCL DRVLSKPTAA ERKFGLLSEC DHPFCISCIR  240
NWRSNSPTSG MDINSALRAC PICRKLSYFV IPSVIWYANQ EEKQEIVNNY KAKLSSIDCR  300
YFDFGNGSCP FGTSCFYKHA YRDGRLEEVA LRHLGAEDGN TVIAKDIRLS DFLSNLRLR*
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026417872.10.0putative RING-type E3 ubiquitin transferase C3H69
RefseqXP_026417873.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotE0X9N41e-173C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-173C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2G5DY880.0A0A2G5DY88_AQUCA; Uncharacterized protein
STRINGAquca_014_00814.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-156C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang CT,Ho CH,Hseu MJ,Chen CM
    The subtelomeric region of the Arabidopsis thaliana chromosome IIIR contains potential genes and duplicated fragments from other chromosomes.
    Plant Mol. Biol., 2010. 74(1-2): p. 155-66
    [PMID:20652368]
  3. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  4. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]