PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G016000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 355aa    MW: 40244.7 Da    PI: 7.8581
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G016000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047273295123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C+k F  + + ++H +++
  Aqcoe2G016000.1.p 273 FMCRKCSKAFAVRGDWRTHEKNC 295
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64189216IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-6189208IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280191211IPR007087Zinc finger, C2H2
SuperFamilySSF576674.57E-6254293No hitNo description
Gene3DG3DSA:3.30.160.606.3E-5260293IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MTDPHFNFFP GWFNNHPQPL FHQNSFSTSN PSPSFPYSYN FYSNNNIINT STTTTTTHSY  60
FHYQTPPPSP PLREALPLLS LSPTRHDEEQ EDPSCSAIED DKKKNIDERN FFSSNSDVDS  120
VTITLNIGLP SPSSSDLVSN RAYSSTEIVD KEGVSVASSG YSSSSSGRLN KGQYWIPTPS  180
QILIGPTQFS CPVCCKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTAM LRLPCYCCAP  240
GCRNNIDHPR SKPLKDFRTL QTHYKRKHGI KPFMCRKCSK AFAVRGDWRT HEKNCGKLWY  300
CICGSDFKHK RSLKDHIKAF GEGHSAYNVD YMEEDDEIAS EVEQDNESSH SQTR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246927.11e-178PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-135ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2G5DY900.0A0A2G5DY90_AQUCA; Uncharacterized protein
STRINGAquca_014_00813.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-127C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]