PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G020000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 750aa    MW: 86540.8 Da    PI: 9.0995
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G020000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.73.8e-1839135290
               FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk.......tekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                        fY++Y++ vGF  ++++++k+ +  ++     ++C ++gk+++ ++        ++ +rr++++ ++gCka+l++++++d++w+v k+++ H
  Aqcoe2G020000.1.p  39 FYRDYGRAVGFGSTTRSTQKRkRGIDKPNICVLCCERYGKHKKVDNPqnnnsekSVVKRRNTSTIKCGCKAQLRLSRMDDDNWRVVKFDKTH 130
                        9**********766555555515556677789*********9988777888887788899999***************************** PP

               FAR1  86 nHela 90 
                        nH+++
  Aqcoe2G020000.1.p 131 NHNFV 135
                        **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-1539135IPR004330FAR1 DNA binding domain
PfamPF105519.7E-31253346IPR018289MULE transposase domain
PROSITE profilePS509669.112495533IPR007527Zinc finger, SWIM-type
PfamPF044342.8E-5507530IPR007527Zinc finger, SWIM-type
SMARTSM005754.1E-4508535IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    Send to blast
MLNCDTGESD VQTSHEEFEN SYAPHEGQVF QTLDEANFFY RDYGRAVGFG STTRSTQKRK  60
RGIDKPNICV LCCERYGKHK KVDNPQNNNS EKSVVKRRNT STIKCGCKAQ LRLSRMDDDN  120
WRVVKFDKTH NHNFVTPSKR FRMSVNRNMP KGAKDLVETF REENLPVGKV ASILDGEIIG  180
FDERDCYNHL RGKKDYKIPI DGDATTMLNF FKKKSIEDPH FFYAIQPDSE GRAVNFFWIN  240
GRSRMQYQNF GDVLYFDTTY KKNVYSMPFA PFTGVNHHLQ SIQFGCTLLL DETEDFFVWA  300
FETFLGAMGG RPPNAIITDQ DKAMGAAIGR IFPNARHRFC LWHILKKFPN YLSHVYFKKS  360
KFKKHIKFCI RGTYRISDFE VMWKELMEKY GLIPVYHLDT FFVGMNITGR SEGMNSFYKD  420
FFTYRTTLKD FAYNNEKCLK RIATREKVED QASEHKDRIV EGETFLLKHA GKVYTKNVYI  480
KLKMQWDKAQ SEYKLHDSKL LEGETKKGTC ECKYFEFMGL PCGHILKVLQ GRDIDEIPDF  540
FILKRWMQEA NKYRAMYDGG LVSGHQTSQL LRTTHLTKVA SILAYEAAEE DDTYTWMAEK  600
LDELSKELKE RKQILKSGTT SIVEETVIDD SLAPIDDSQD PLDISLLIGD LSQPTGFSQP  660
LSDVIQTPLD VLLPTIGTSH IVLKNPKQSK PKGRPVDDHK SNSSRIKAGI ETSRKRKISQ  720
EGRQCKCCLL WGTGHDKRTC PQNPNRKKK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-98FAR1-related sequence 5