PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G021300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YA
Protein Properties Length: 344aa    MW: 37350.4 Da    PI: 8.0259
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G021300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.63.1e-31171227158
          CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                        ++p+YVN+KQy++I++RRq+Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF
  Aqcoe2G021300.3.p 171 EDPVYVNPKQYNGIMRRRQSRAKAEIERKL-IKVRKPYLHESRHQHALRRQRGCGGRF 227
                        58****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.2E-35169230IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.591170230IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.9E-26173227IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-22173195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.1E-22204227IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MCSNPETTNP VEVDHSNSNS QPWWKSKGYN AAPSLELGDP ASKTSLESSP DSCMVTKEGK  60
TQGDGGLNGS DTVCKDVVTS ALPQSGLEGN QGPGHRHLQQ LASIAPPTGV EYLVSQTQPE  120
LVGHSIACAA YPYPDPYYGG LLTAYGAPTL VNPQLLGMHH TRMPLPLEMA EDPVYVNPKQ  180
YNGIMRRRQS RAKAEIERKL IKVRKPYLHE SRHQHALRRQ RGCGGRFVNT KKRNDGTQQT  240
PENGTGSASV APNTKPSTPP GSAVTNQFTG KLNASDGQEE FEKQPKHTYS NDDSNDNCYQ  300
HQRDFRLSAF HPLTGERGEE GDCSGQLRGS ISVRQASCRA LAI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18171241272NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278970.11e-106PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010278972.11e-106PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_010278973.11e-106PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_026426027.11e-106nuclear transcription factor Y subunit A-9-like isoform X2
TrEMBLA0A2G5DY180.0A0A2G5DY18_AQUCA; Uncharacterized protein
STRINGAquca_014_00766.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.43e-43nuclear factor Y, subunit A1