PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G031700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 474aa    MW: 52994.1 Da    PI: 6.2045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G031700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS460.97.4e-141484681374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL++cA+ v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +s+lykal++++ s  +++e + +++ f++++P+lk
  Aqcoe2G031700.1.p  48 LIHLLISCANQVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRVLKAWSGLYKALNSTKIS--SVAEGILVRRSFFDLCPFLK 137
                        689*************************************************************999998..59****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                        ++ +++NqaI+ea+ege+ vHiiD+++s+++QW+aLlqaL +Rpegpp+lRiTg+++    +ke le+t+  L++ Ae+l++pf+fn+ +++
  Aqcoe2G031700.1.p 138 LAIVITNQAIMEAMEGEKIVHIIDLSASEPAQWIALLQALKARPEGPPHLRITGIHE----HKEVLEQTALCLTEEAEKLDIPFQFNP-IVS 224
                        *********************************************************....9**************************.799 PP

               GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrll......................................................desvsles 222
                        +le+l++e+Lrvk+gEa+aV++ lqlh+ll                                                      ++++ ++ 
  Aqcoe2G031700.1.p 225 KLEKLDIESLRVKTGEAVAVSSTLQLHSLLasddeilrkkfsppknmnsaqlhrvfkmnqstlgelmekdmvngyspshdspssSSPLLTSA 316
                        9*****************************************************************************99998644444555 PP

               GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlek 314
                        + +++L  +++lsPk++vv+eqe++hn+++++er+leal+yy++lfd+le++lpr+s erikvE++l+g+ei+n++aceg er+erhe+l +
  Aqcoe2G031700.1.p 317 KMESFLMSLWGLSPKIMVVAEQESNHNGSTLMERLLEALYYYASLFDCLESTLPRASMERIKVEKMLFGEEIKNIIACEGVERKERHEKLDR 408
                        8899**************************************************************************************** PP

               GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                        W +rle +GF+ vpls++   qa++ll+ ++ dgy+++ee+g+lv++W+dr+L+svS+Wr
  Aqcoe2G031700.1.p 409 WIQRLELSGFGRVPLSYFGLLQARRLLQSYGCDGYKIKEENGCLVICWHDRALFSVSSWR 468
                        ***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.43922448IPR005202Transcription factor GRAS
PfamPF035142.6E-13848468IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MEGVVQDEGS SSVTSSSPLH IFSLMSLSPG LGSPWIREMK SEERGLYLIH LLISCANQVA  60
AGSLENANIG LEQISHLASP DGDTMQRIAA YFTEALADRV LKAWSGLYKA LNSTKISSVA  120
EGILVRRSFF DLCPFLKLAI VITNQAIMEA MEGEKIVHII DLSASEPAQW IALLQALKAR  180
PEGPPHLRIT GIHEHKEVLE QTALCLTEEA EKLDIPFQFN PIVSKLEKLD IESLRVKTGE  240
AVAVSSTLQL HSLLASDDEI LRKKFSPPKN MNSAQLHRVF KMNQSTLGEL MEKDMVNGYS  300
PSHDSPSSSS PLLTSAKMES FLMSLWGLSP KIMVVAEQES NHNGSTLMER LLEALYYYAS  360
LFDCLESTLP RASMERIKVE KMLFGEEIKN IIACEGVERK ERHEKLDRWI QRLELSGFGR  420
VPLSYFGLLQ ARRLLQSYGC DGYKIKEENG CLVICWHDRA LFSVSSWRCR RYD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-46484684375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010273289.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2G5DXM80.0A0A2G5DXM8_AQUCA; Uncharacterized protein
STRINGAquca_014_00674.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]