PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G040300.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SRS

Protein Properties

Length: 360aa MW: 38027.7 Da PI: 8.1127

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G040300.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214	3.5e-66	147	302	4	153
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssae 95 ta+CqdCGnqakkdC+h+RCRtCCksrg+dCath+kstWvpaa+rrerq +a aa+s +++ k++r ++++++s+t++s+++ Aqcoe2G040300.3.p 147 STATCQDCGNQAKKDCSHRRCRTCCKSRGYDCATHIKSTWVPAARRRERQLSSTAV---AASSGSTSGVKKPRLI--DSHTTTSHTSTSNTT 233 6789*******************************************7766665...4444567888888865..999999***** PP DUF702 96 skkeletss...........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++++++tss lP +++++avf+cvrv++vddg++e+aYq++v+igGhvfkG+LydqG+e Aqcoe2G040300.3.p 234 PPRSFDTSSshhqdasfrdaLPGQIRAPAVFKCVRVTAVDDGDDEYAYQAVVKIGGHVFKGFLYDQGIE 302 ***999*******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.0E-61	148	302	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	1.2E-26	150	192	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	6.3E-30	254	301	IPR006511	Lateral Root Primordium type 1, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MGMVGLRGGD VFVVAPASSF HPHNQHHHHH HHQHQHDSIH SDPITNSNTA LGVGVGVGVG 60 LIPLLTPGNM GIEDGHEDLN LNSNRSRGGS GGHGIQLWQN QQSHHHHNHN QSHYLSNKKP 120 MLFDSDNSMN LLTVSGSGAG NSAATTSTAT CQDCGNQAKK DCSHRRCRTC CKSRGYDCAT 180 HIKSTWVPAA RRRERQLSST AVAASSGSTS GVKKPRLIDS HTTTSHTSTS NTTPPRSFDT 240 SSSHHQDASF RDALPGQIRA PAVFKCVRVT AVDDGDDEYA YQAVVKIGGH VFKGFLYDQG 300 IEGREGFPNM AELHLGGTSG NAGRNGASSS SPVIDPSDVY AASGGGLLGG TSLLGVKNY*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MGMVGLRGGD VFVVAPASSF HPHNQHHHHH HHQHQHDSIH SDPITNSNTA LGVGVGVGVG  60
LIPLLTPGNM GIEDGHEDLN LNSNRSRGGS GGHGIQLWQN QQSHHHHNHN QSHYLSNKKP  120
MLFDSDNSMN LLTVSGSGAG NSAATTSTAT CQDCGNQAKK DCSHRRCRTC CKSRGYDCAT  180
HIKSTWVPAA RRRERQLSST AVAASSGSTS GVKKPRLIDS HTTTSHTSTS NTTPPRSFDT  240
SSSHHQDASF RDALPGQIRA PAVFKCVRVT AVDDGDDEYA YQAVVKIGGH VFKGFLYDQG  300
IEGREGFPNM AELHLGGTSG NAGRNGASSS SPVIDPSDVY AASGGGLLGG TSLLGVKNY*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276642.1	1e-124	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like
Refseq	XP_010651514.2	1e-123	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	8e-92	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2G5DX61	0.0	A0A2G5DX61_AQUCA; Uncharacterized protein
STRING	Aquca_014_00598.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	4e-70	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Aqcoe2G040300.3.p

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]