PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G042300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Trihelix

Protein Properties

Length: 240aa MW: 26538.8 Da PI: 9.4104

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G042300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.6	1e-15	45	128	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v L++a+++++ +r+klk+++We+v+ ++ +++ ++++qCk+k+e+++kry+ + + s++p+f++l+ Aqcoe2G042300.2.p 45 EWSEGAVSSLLDAYESKWVLRNRAKLKGHDWEDVAHHVssraNSTKSPKTQTQCKNKIESMKKRYRSESAATDT------SSWPLFQRLD 128 5***********************************88777778889999**********99887775......57***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.5E-20	43	128	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEKTEQVNNQ DIVPSLLDSS RKPSGGNTLT AATGGSGGDR LKRDEWSEGA VSSLLDAYES 60 KWVLRNRAKL KGHDWEDVAH HVSSRANSTK SPKTQTQCKN KIESMKKRYR SESAATDTSS 120 WPLFQRLDLL LRYRTHPPPT TATTNANTNP PLVLLDQQPT PSLPLPPPPQ LPPATALPPS 180 GIHQNSHESN GVEPMAKDTN WKYLNQSDGR NRLRAVQVAY NNITVLCCVC VYTQDLIFR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862422.1	4e-66	trihelix transcription factor ASIL2
TrEMBL	A0A2G5EWQ8	1e-177	A0A2G5EWQ8_AQUCA; Uncharacterized protein
STRING	Aquca_004_00804.1	1e-143	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	3e-54	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Aqcoe2G042300.2.p