PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G043500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 250aa    MW: 26796.5 Da    PI: 8.4726
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G043500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.87.9e-087699225
                       -S---SGGGGTS--TTTTT-SS-S CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                       k ++C+ f+ t  C+yG++C+F+H
  Aqcoe2G043500.1.p 76 KPKPCMKFFSTSGCPYGESCHFMH 99
                       7789******************** PP
2zf-CCCH30.65.7e-10141167127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC++f     C++Gd+C+FaHg+
  Aqcoe2G043500.1.p 141 YKTKLCNRFNTDEGCRFGDKCHFAHGE 167
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.693361IPR000571Zinc finger, CCCH-type
SMARTSM003563.13660IPR000571Zinc finger, CCCH-type
PfamPF146080.0653858No hitNo description
Gene3DG3DSA:4.10.1000.103.9E-53961IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.25874102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-87699IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-676100IPR000571Zinc finger, CCCH-type
SMARTSM003560.2376101IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-67699IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-15140172IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-4140167IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962140168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-9141171IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-7141167IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEPYQKRFRS EKGGYWSNHR VSDQFGNGGS GGGGGNQQCK RFNTPEGCPF GSNCRFRHVS  60
SDGQDNSTQG LSSGGKPKPC MKFFSTSGCP YGESCHFMHY IPGGLSSLGL APIVSLSAAP  120
SVSFQRKAVP IGDPSISING YKTKLCNRFN TDEGCRFGDK CHFAHGERDL RLPNNQSQGN  180
IRRAPREGQG IDPLEYRNEG YDISNLGTFP NTADLAPQGY GQVTPPGVTG SDGSANYVTA  240
SGSENLRVY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247477.11e-109PREDICTED: zinc finger CCCH domain-containing protein 14-like
TrEMBLA0A2G5EWL40.0A0A2G5EWL4_AQUCA; Uncharacterized protein
STRINGAquca_004_00792.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-13C3H family protein