PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G048900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 257aa    MW: 28584.2 Da    PI: 6.1518
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G048900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.2e-1485131354
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        ++h e+E+rRR+riNs +++Lr+llP        K +Ka+ L k+++++k+L
  Aqcoe2G048900.1.p  85 KTHREAEKRRRERINSHLNRLRSLLPCT-----SKTDKASLLAKVIHHVKEL 131
                        79*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1982131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.8E-1485140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-1185131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-1486139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-1288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.25E-595134No hitNo description
Gene3DG3DSA:3.30.70.2604.8E-5170220No hitNo description
CDDcd048732.31E-6170235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0009941Cellular Componentchloroplast envelope
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MNMQPENLPV SSDFYQLITG EQFGSYQQYG CFPSTTSCYD YDGGVLAAAA GGGDPSFCGS  60
SSFYPFENSD ITDLPSQAKA LAASKTHREA EKRRRERINS HLNRLRSLLP CTSKTDKASL  120
LAKVIHHVKE LKQQAMEISE RELFPSETDE ITVLSLDLSS EGRKSVLKAS LCCEDRSDLL  180
PDLIETLKSL RLKTLRAEMA TLGGRIRNVL IVTGEEDDDQ CNESIGFLRE ALTNLVDRSS  240
SCDRSKRRRI FDRRAT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245249KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271836.11e-105PREDICTED: transcription factor bHLH106-like
SwissprotO806746e-58BH106_ARATH; Transcription factor bHLH106
TrEMBLA0A2G5EWH40.0A0A2G5EWH4_AQUCA; Uncharacterized protein
STRINGAquca_004_00748.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41130.13e-58bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]