PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G053200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 747aa    MW: 85984.1 Da    PI: 8.3039
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G053200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.66.6e-1689159174
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdg 74 
                        +fYn+YAke+GFsvrk ++kk+  n+ei ++++vC k+gk +  +++  +++r+r + r gCkakl v k+ ++
  Aqcoe2G053200.1.p  89 EFYNAYAKEAGFSVRKWSEKKN-ANKEILRKEYVCFKQGKCSLIEDA--EKSRRRGSLREGCKAKLAVAKSGND 159
                        6***************999888.8888***************99888..8999999************998643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1389159IPR004330FAR1 DNA binding domain
PfamPF105514.1E-33269362IPR018289MULE transposase domain
PfamPF044342.4E-6515543IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.954517549IPR007527Zinc finger, SWIM-type
SMARTSM005750.0066524552IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 747 aa     Download sequence    Send to blast
MALIRTCLMR TCADIPKIKR VTYSFCMDNL EPGSDLFKIN GIENNTELEE VEMRENAEES  60
FNYDIILPIA NNLKPHMGQD FSSLDDVLEF YNAYAKEAGF SVRKWSEKKN ANKEILRKEY  120
VCFKQGKCSL IEDAEKSRRR GSLREGCKAK LAVAKSGNDH IVSIAQKCLS QQFSMVNIPT  180
HQQYNFLGVQ AGGFENIGCI QKDLYNYQRD VRKELKGHDA KMFREYLKSE EEKNPSFTYT  240
IDVDDEQRIC RVFWADATSR KDYALYGDVV VFDTTYNTNR YKLILAPLMG VNNHGQTIIF  300
GCAFLSDETI PSFVWLFKQF LQAMPGDAPK MIITDQDPAM TNAIAQTLPK TFHRYCSWHI  360
LNKFSEKLDA VKYSIYYKKF YNCIWHSKSQ EEFDLVWLDL VQKSGLQDNK WLESMFEIRL  420
KWVPVYTSHV FSPEMSSSQR AESSHSFFKK YVQEENSWFS LIEDFKNSVT KYFSNSKENC  480
WRASITNFRL SVRQILFDYI RLKEKNLETD KGRQVSYEKD LDHVSCSCNK FESMGIPCRH  540
ILAYLHKYTD IWSKSTKSKT VIDHGDALSS AEEKINLLIA SSGSEKKDNY TVDYSTSGKR  600
KKMVDCVTDV EMTEQANCYR EPNQARAKGC GKRFKGGKEK ATGSGKKIEG RLCAKTWQNL  660
WMWMDGFLDQ AVVKGALERR PLLNYNRLIG DCSDVAWKVL SYTSLQQFGV SGKLARNNII  720
FNGEEMDMDK LAKFIKLTVL GLDGGA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020272573.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5CLD20.0A0A2G5CLD2_AQUCA; Uncharacterized protein
STRINGAquca_046_00031.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-77FAR1-related sequence 5