PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G069200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 794aa    MW: 86969 Da    PI: 6.4727
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G069200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS410.91.2e-1254267862374
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                         +lLl+cAeav+++++++a+++L ++sel++p g++ qR+aayf eA++arl++s+ ++y+ lp  + +   s++ ++a+++f+ +sP++kf
  Aqcoe2G069200.1.p 426 LTLLLQCAEAVEADNFQEANEMLLEISELSTPFGTSAQRVAAYFSEAMSARLVSSCLGIYAPLPNAPHH---SQKMASAFQVFNGISPFVKF 514
                        579*********************************************************999998888...99999*************** PP

               GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                        sh+taNqaI ea+e+e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     + e+le+tg+rL++fAe+lg+pfef + +a++
  Aqcoe2G069200.1.p 515 SHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPFVRLTGLGT----NMEALEATGKRLSDFAETLGLPFEFFP-LAEK 601
                        ********************************************************....9**************************.59** PP

               GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleak 274
                        + +l++e+L+v+++Ea+aV++ +  h+l+d ++s ++    +L+l+++l Pkvv++veq+   + +++++Fl rf+ea++yysalfdsl a+
  Aqcoe2G069200.1.p 602 VGNLDPERLNVSKREAVAVHWLH--HSLYDVTGSDTN----TLWLLQRLAPKVVTMVEQDrsqTGTQASTFLGRFVEAIHYYSALFDSLGAS 687
                        **********************9..999999999999....*******************533333667*********************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +++eseer++vE++ll+rei+nv+a  g  r+ + + +++Wr++l+++GF+ ++l  +aa+qa+lll +++ dgy++ +++g+l lgWkd +
  Aqcoe2G069200.1.p 688 YGEESEERHVVEQQLLSREIRNVLAVGGPGRTGEVK-FQNWRDKLKQSGFRGISLAGNAATQANLLLGMFPCDGYTLLDDNGALKLGWKDLS 778
                        ******************************998887.******************************************************* PP

               GRAS 367 LvsvSaWr 374
                        L+++SaWr
  Aqcoe2G069200.1.p 779 LLTASAWR 786
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.541399766IPR005202Transcription factor GRAS
PfamPF035144.1E-123426786IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MAACILLSGR NANGSNSTTS SSNSSSDRMG SSSNEVRNFP PPPPPQPSSL QQNGSTSTNK  60
IVRKRSAAEM DLQTFSTTTT TITTPFQRLS RRPTTSNNTF INTDITNPNS IPIAIQPNHS  120
TTNNTQSQSP FSNMTSVGIS SIGGFITGFS SSSTSSNTTS ASSSFPCYLD SSTVLLPTPA  180
VCGFSGLPVF PSESNNNNNN IITNNSIVSN PINNSSSSMD DTTATAWIDG IIKDLVNSTT  240
SVSIPQLIQN IRDIIYPCNA NLAALLEYRL RSLMEPVVEQ NDRRKEFVGL QRQIHQQTSS  300
GLIRPHVHES NLDTGFAFSD PSLHSANQFM NWGATNLQSN EANQQIHHHQ QQLSSSIASI  360
PPPVNQLVQQ QQQQQQQQQD QQQQQLVQKQ SSSQAVVAPT TPQAAIRDKK EEIRQKKRDE  420
EGLHLLTLLL QCAEAVEADN FQEANEMLLE ISELSTPFGT SAQRVAAYFS EAMSARLVSS  480
CLGIYAPLPN APHHSQKMAS AFQVFNGISP FVKFSHFTAN QAIQEAFERE DRVHIIDLDI  540
MQGLQWPGLF HILASRPGGP PFVRLTGLGT NMEALEATGK RLSDFAETLG LPFEFFPLAE  600
KVGNLDPERL NVSKREAVAV HWLHHSLYDV TGSDTNTLWL LQRLAPKVVT MVEQDRSQTG  660
TQASTFLGRF VEAIHYYSAL FDSLGASYGE ESEERHVVEQ QLLSREIRNV LAVGGPGRTG  720
EVKFQNWRDK LKQSGFRGIS LAGNAATQAN LLLGMFPCDG YTLLDDNGAL KLGWKDLSLL  780
TASAWRPIHT THR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04097873380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010278894.10.0PREDICTED: protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLA0A2G5EVH60.0A0A2G5EVH6_AQUCA; Uncharacterized protein
STRINGAquca_004_00566.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein