PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G071100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 798aa    MW: 92207.8 Da    PI: 8.7029
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G071100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR196.23.7e-3068158190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+YA ++GFs+rks++++s+ + ei+ rtf+Cs eg r+++ k+ e++ r+ra trtgCka ++v+k+k +++w+v+k+ ++HnH+l+
  Aqcoe2G071100.1.p  68 NFYNRYAANMGFSIRKSTTNRSRITSEIIGRTFCCSLEGMRDPRAKTVEERIRNRADTRTGCKAIMVVRKKKkKETWRVSKVIENHNHALV 158
                        6**********************************************9*********************99999***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.1E-2768158IPR004330FAR1 DNA binding domain
PfamPF105517.6E-30280374IPR018289MULE transposase domain
PROSITE profilePS509669.817561597IPR007527Zinc finger, SWIM-type
PfamPF044342.7E-7572593IPR007527Zinc finger, SWIM-type
SMARTSM005755.4E-8572599IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MVCESNVVDD NPIQYDESEE NFINITRDEN EPICENGADE EYVMNKTDRH VHCPCVGMEF  60
NSHEEAYNFY NRYAANMGFS IRKSTTNRSR ITSEIIGRTF CCSLEGMRDP RAKTVEERIR  120
NRADTRTGCK AIMVVRKKKK KETWRVSKVI ENHNHALVTP SKRHRLRSQR SVRSTQGHIM  180
DNMLTAGIRT NLMVSFLASE AGGIQNVGFT KKDANNYLTS KRQKELANGD AQVVLDHLRQ  240
QQMENPAFFY TIQIDSEGRM TNFLWADARS RMDYHYFGDV VCFDPTYGTN KYNMPFVPIV  300
GINHHYQTVL FGGALLYSET EEAFVWVMKS WMVAMDEKQP KIILTDQESA IGGAIKQVLP  360
GTRHYYCSWH IGRNAMKHLA HEINSQPDFF SDFNKCIYDY ETIPEFQSCW DAMIKKYNLE  420
ENNWLINLFE KREKWASVYR RDIFCGGMTT TQRSESINSY FDKYLKKGMP LWEFMKQYER  480
AVVDRREEEN NADYDTIHSN QVLRFSMKIE KEASNIYTKA IFKKFQEQLI LGLSYRHKKV  540
EDDGIAFVYK VWMEGYEYKA RTVIFEPSTT NVKCSCQMFD FSGYLCRHAL KIFVVEDVQN  600
LPEQYILKRW TREAKSGSTV FTKDEGTRLK LKESVALRYS KLCQDGVHIA SKASHSDVVF  660
EVALKGFDDT LKNVEAAIRK LSLHMEPQNG DSGTTSVEVA YPDNILEPLL DPLVKNGKGR  720
PKTFLNLIDR IKKKKTKANK KGLQQKNKSS TSSKVSRKNA SQSNTLLPTH TQIFVQANHA  780
HGNVMFDLNN FPQDPFV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135141RKKKKKE
2728734DRIKKKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-165FAR1-related sequence 5