PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G074800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bZIP

Protein Properties

Length: 397aa MW: 43324.5 Da PI: 6.1366

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G074800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.4	8.5e-10	196	252	5	61
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i eLe+kv++L++e ++L +l + l s Aqcoe2G074800.1.p 196 KRAKRILANRQSAARSKERKARYILELERKVQTLQTEATTLSAQLTLFQRDTTGLSS 252 9****************************************9998877666655555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.3E-15	192	256	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.611	194	257	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.3E-8	196	253	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.95E-10	196	247	No hit	No description
Gene3D	G3DSA:1.20.5.170	4.4E-7	196	241	No hit	No description
CDD	cd14703	3.29E-22	197	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MQETSNPNSS SNINVNNTQQ QQQNATQKSS TTMFTSSNPN STTTTTTTSF RGSHHRRAHS 60 EVNFRLPDDL DLGSDPFDVS TPSFDEIGSE DDLFTYMDIE KLSSAGGIGG GNFDSQQIEC 120 GGIGIGTAFD SSNQQQNINS GGGGNGGPMR SRHRHSNSVD SSSTLMKDEN LLGDVMDAKK 180 AMAPDKLAEL WALDPKRAKR ILANRQSAAR SKERKARYIL ELERKVQTLQ TEATTLSAQL 240 TLFQRDTTGL SSENTELKLR LQAMEQQAQL RDALNEALKQ EVERLKIATG EAVSHSEAFN 300 MGMQYMPYNT SSMFSLPQQP GQGRHQNMQF SQFHSSQSNM MNHTPPGSSS HPFSEMSQQD 360 PLGRFQGLDI SSNNRESHLV KSEGPSISAS GSSSAL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MQETSNPNSS SNINVNNTQQ QQQNATQKSS TTMFTSSNPN STTTTTTTSF RGSHHRRAHS  60
EVNFRLPDDL DLGSDPFDVS TPSFDEIGSE DDLFTYMDIE KLSSAGGIGG GNFDSQQIEC  120
GGIGIGTAFD SSNQQQNINS GGGGNGGPMR SRHRHSNSVD SSSTLMKDEN LLGDVMDAKK  180
AMAPDKLAEL WALDPKRAKR ILANRQSAAR SKERKARYIL ELERKVQTLQ TEATTLSAQL  240
TLFQRDTTGL SSENTELKLR LQAMEQQAQL RDALNEALKQ EVERLKIATG EAVSHSEAFN  300
MGMQYMPYNT SSMFSLPQQP GQGRHQNMQF SQFHSSQSNM MNHTPPGSSS HPFSEMSQQD  360
PLGRFQGLDI SSNNRESHLV KSEGPSISAS GSSSAL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00303	DAP	Transfer from AT2G40620	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010253091.1	1e-157	PREDICTED: transcription factor RF2b isoform X2
Swissprot	O22873	1e-108	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A2G5EVC5	0.0	A0A2G5EVC5_AQUCA; Uncharacterized protein
STRING	Aquca_004_00525.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	1e-104	bZIP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G074800.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]