PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G085800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 543aa    MW: 61584.6 Da    PI: 4.4346
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G085800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS134.21.4e-411735424374
               GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                        lL +  ea++ ++ ela+ ++ r++e +sp g+ ++R+a yf +AL ++              ++++   s++  aa+++f++  P  +f+h
  Aqcoe2G085800.1.p 173 LLKAYGEAIEIEQVELAEVIMRRIKEKVSPMGSIIERIAYYFFQALDKQGDY----------LKQEA---SKNYGAAFRAFYQKLPNGRFAH 251
                        666778999**************************************98766..........23333...67888999************** PP

               GRAS  96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg......skeeleetgerLakfAeelgvpfefnv 180
                        +taN+aIle + ++ e++HiiDfdi+ G+QWp+L++a+ +       +R+T ++ +e           + +et++rL +  ++lg++++ + 
  Aqcoe2G085800.1.p 252 FTANSAILEGIPHDvETLHIIDFDIGDGVQWPPLFEAIGC----GRAVRLTSIKWKEDCdsnsdsPLWSFQETKRRLYNHSKSLGLKLKVEE 339
                        ***********9998***********************98....4689*****99766577765566689*******************999 PP

               GRAS 181 lvakrledleleeLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk........vvvvveqe....adhnsesFler 256
                        +   ++e+l  ++++vk+    +E l+ n+++ l ++ +++   +   +e+Lk+ k+l +         ++++ e +      +n + F   
  Aqcoe2G085800.1.p 340 M---DVEELVSKMMNVKTintkKEWLVFNCMVGLPQMGRQRSRRP--VKEFLKVAKELISSkcsntsrgIITLGEGDgvedRMRNCSGFGSF 426
                        7...888888889988888888***************96555554..599****9998442233444449*****88543244588999999 PP

               GRAS 257 flealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvk. 345
                        + e l ++ ++f s++  +p++  e+ri +E  ++++ i+++ + e  e      + +k  + l++ + +++ ++s ++  qak ++++ + 
  Aqcoe2G085800.1.p 427 LDEYLVHFHTMFQSMQGHFPSHLaEARIAMESLFVAPFISSLSCYEMWE------EIKKGGNGLKSvSELESWRFSRENLLQAKEIVQEGNs 512
                        99*************99999987799*******9999999876666665......45555566665489********************996 PP

               GRAS 346 sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                        +   r+ee  + ++ l   + +Lv vSaWr
  Aqcoe2G085800.1.p 513 MYSVRIEEGYENMMsLEYLGTSLVKVSAWR 542
                        677777887666666**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.982144520IPR005202Transcription factor GRAS
PfamPF035144.8E-39173542IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MQQQQLLHPS WQYYDNTIDS SPLDMDVFMG DCEFSSSLTT TEDSSDVSSI LYFPSNSMSR  60
DDYLIPLPNF SDDVPFMFAS EQYSPNSDDL GLISSDEVLS DAIENVFDWM QGMEGSEVSL  120
PSQHTFSQED YEGSLGSSMK LMDNSPEITS VQSSLVMPME DMEVDNQLSI PSLLKAYGEA  180
IEIEQVELAE VIMRRIKEKV SPMGSIIERI AYYFFQALDK QGDYLKQEAS KNYGAAFRAF  240
YQKLPNGRFA HFTANSAILE GIPHDVETLH IIDFDIGDGV QWPPLFEAIG CGRAVRLTSI  300
KWKEDCDSNS DSPLWSFQET KRRLYNHSKS LGLKLKVEEM DVEELVSKMM NVKTINTKKE  360
WLVFNCMVGL PQMGRQRSRR PVKEFLKVAK ELISSKCSNT SRGIITLGEG DGVEDRMRNC  420
SGFGSFLDEY LVHFHTMFQS MQGHFPSHLA EARIAMESLF VAPFISSLSC YEMWEEIKKG  480
GNGLKSVSEL ESWRFSRENL LQAKEIVQEG NSMYSVRIEE GYENMMSLEY LGTSLVKVSA  540
WR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-1317834527207Protein SCARECROW
5b3h_A2e-1317834526206Protein SCARECROW
5b3h_D2e-1317834526206Protein SCARECROW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EUX20.0A0A2G5EUX2_AQUCA; Uncharacterized protein
STRINGAquca_004_00426.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.12e-20GRAS family protein