PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G102300.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 231aa    MW: 26815.1 Da    PI: 10.4945
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G102300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.41.3e-1839124798
                        .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +s   + g+l +pkkf+++hg+    +  ++l+ +sg  W+v+l  +k +g+++l++GW eFv+ + +++g ++vF+++++s+f   v +f+
  Aqcoe2G102300.2.p  39 SSFIIQDGQLGIPKKFITKHGKY--LPDVVVLKVPSGMAWQVEL--KKIDGSVYLQNGWLEFVDHHSICAGHVLVFRYNRKSRF--DVLIFD 124
                        555667899***********855..78899**************..********************************988888..888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.88E-2430126IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-2532127IPR015300DNA-binding pseudobarrel domain
CDDcd100172.17E-1833124No hitNo description
PROSITE profilePS5086314.33933126IPR003340B3 DNA binding domain
SMARTSM010192.9E-1634126IPR003340B3 DNA binding domain
PfamPF023622.1E-1535123IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MKNNRMRHST HHQQHHCSPK RHKHQEPNGS SYSFFKIISS FIIQDGQLGI PKKFITKHGK  60
YLPDVVVLKV PSGMAWQVEL KKIDGSVYLQ NGWLEFVDHH SICAGHVLVF RYNRKSRFDV  120
LIFDMSCSEI DYLCNSKKIG QFNHMKDTLV PKKEAGDITI GKTGSLKRDL VRKRRVETEE  180
RTGNILQRAT TFKTKHHFFK VFMRPSYVKS RYVLINKEKG VLKVNICSEE *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EUI44e-98A0A2G5EUI4_AQUCA; Uncharacterized protein
STRINGAquca_004_00299.16e-99(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-23B3 family protein